Sequence 1: | NP_723044.1 | Gene: | Col4a1 / 33727 | FlyBaseID: | FBgn0000299 | Length: | 1779 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_017209263.1 | Gene: | col24a1 / 101883924 | -ID: | - | Length: | 643 | Species: | Danio rerio |
Alignment Length: | 379 | Identity: | 134/379 - (35%) |
---|---|---|---|
Similarity: | 158/379 - (41%) | Gaps: | 156/379 - (41%) |
- Green bases have known domain annotations that are detailed below.
Fly 839 NGQPGPRGEPGISRPGPMGPPGLNGLQGEKGDRGPTGPIGFPGADGSVGYPGDRGDAGLPGVSGR 903
Fly 904 PGIVGEKGDVGPIGPAGVAGPPGVPGIDGVRGRDGAKGEPG-SPGLVGMPGNKGDRGAPGNDGPK 967
Fly 968 GFAGVTGAPGKRGPAGIPGVSGAKGDKGATGLTGNDGPVGGRGPPGAPGLMGIKGDQGLAGAPGQ 1032
Fly 1033 QGL---DGMPGEKGNQGF---PGLDGPPGLPGDASEKGQKGEPGPSGLRGDTGPAGTPGWPGEKG 1091
Fly 1092 LPGLAVHGRAGPPGEKGDQGRSGIDGRDGINGEKGEQGLQGVWGQPGEKGSVGAPGIPGAPGMDG 1156
Fly 1157 LPGAAGAPGAVGYPGDRGDKGEPGLSGLPGLKGETGPVGLQGFTGAPGPKGERG 1210 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Col4a1 | NP_723044.1 | Collagen | 104..161 | CDD:189968 | |
Collagen | 322..380 | CDD:189968 | |||
Collagen | 413..465 | CDD:189968 | |||
Collagen | 499..561 | CDD:189968 | |||
Collagen | 574..632 | CDD:189968 | |||
Collagen | 657..714 | CDD:189968 | |||
Collagen | 765..824 | CDD:189968 | |||
Collagen | 854..911 | CDD:189968 | 17/56 (30%) | ||
Collagen | 884..943 | CDD:189968 | 10/58 (17%) | ||
Collagen | 923..982 | CDD:189968 | 30/59 (51%) | ||
Collagen | 1028..1085 | CDD:189968 | 30/62 (48%) | ||
Collagen | 1229..1287 | CDD:189968 | |||
Collagen | 1318..1376 | CDD:189968 | |||
Collagen | 1399..1458 | CDD:189968 | |||
Collagen | 1477..1534 | CDD:189968 | |||
C4 | 1555..1662 | CDD:128421 | |||
C4 | 1663..1777 | CDD:128421 | |||
col24a1 | XP_017209263.1 | None | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |