DRSC/TRiP Functional Genomics Resources

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Protein Alignment Col4a1 and col13a1

DIOPT Version :9

Sequence 1:NP_723044.1 Gene:Col4a1 / 33727 FlyBaseID:FBgn0000299 Length:1779 Species:Drosophila melanogaster
Sequence 2:XP_031761170.1 Gene:col13a1 / 100498211 XenbaseID:XB-GENE-6462746 Length:769 Species:Xenopus tropicalis


Alignment Length:879 Identity:332/879 - (37%)
Similarity:395/879 - (44%) Gaps:282/879 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   317 PEGDTGLDGQKGEKGLPGGPGDRGRQGNFGPPGSTGQKGDRGEPGLNGLPGNPGQKGEPGRAGAT 381
            |.|..|:.|::|:||..|.||..||      ||..|.||..|.||..||.|:||:||.||..|.:
 Frog   120 PPGPPGVRGRRGQKGQTGPPGPIGR------PGLPGDKGGLGIPGRMGLKGHPGEKGVPGEPGMS 178

  Fly   382 GKPGLLGPPGPPGGGRGTPGPPGPKGPRGYVGAPGPQGLNGVDGLPGPQGYNGQKGGAGLPGRPG 446
                ::||          .||||..|.||:.|.|||.||   ||.||..|..|:||..|.||..|
 Frog   179 ----IIGP----------RGPPGQPGTRGFPGFPGPIGL---DGKPGHPGQKGEKGEMGPPGPKG 226

  Fly   447 NEGPPGKKGEKGTAG---------LN-------------------GPKGSIGPIGHPGPPGPEGQ 483
            :.|..|.|||||..|         :|                   |..|..||.|.||||||.|.
 Frog   227 HPGTSGVKGEKGHCGDYTHRLLPLINTVRVAQPSVIKRRIYQGEQGQTGIQGPPGLPGPPGPSGP 291

  Fly   484 KGDAGLPGYGIQGSKGDAGIPGYPGLKGSKGERGFKGNAGAPGDSKLGRPGTPGAAGAPGQKGDA 548
            .||.|||  |:.|:.|.||.||.||..|       |...|.||..     |.|||:|.||:||:.
 Frog   292 PGDQGLP--GVAGTPGKAGEPGKPGKDG-------KSLPGPPGPK-----GEPGASGTPGKKGEV 342

  Fly   549 GRPGTPGQKGDMGIKGDVGGKCSSCRAGPKGDKGTSGLPGIPGKDGARGPPGERGYPGERGHDGI 613
            |..|..|..|..|:            ||.|||||..|:            .||||.||..|..||
 Frog   343 GESGLLGAPGLPGV------------AGAKGDKGEEGM------------KGERGMPGMPGKHGI 383

  Fly   614 NGQTGPPGEKGEDGRTG--LPGATGEPGKPALCDLSLIEPLKGDKGYPGAPGAKGVQGFKGAEGL 676
            .|:.|.||||||.|.||  :.|..||||.|                                 ||
 Frog   384 KGEPGIPGEKGEKGDTGNTIGGVKGEPGNP---------------------------------GL 415

  Fly   677 PGIPGPKGEFGFKGEKGLSGAPGNDGTPGRAGRDGYPGIPGQSIKGEPGFHGRDGAKGDKGSFGR 741
            .|.||||||                     ||..|.||:|||  :||   .|..|:||::|..|.
 Frog   416 QGPPGPKGE---------------------AGDIGQPGVPGQ--RGE---KGATGSKGEQGLIGS 454

  Fly   742 SGEKGEPGSCALDEIKMPAKGNKGEPGQ---TGMPGPPGEDGSPGERGYTGLKGNTGPQGPPGVE 803
            .|.|||||...:.|.    .||..|..|   |...|||                  ||.|||   
 Frog   455 RGPKGEPGKSEMVEY----NGNLNEALQEIRTMALGPP------------------GPPGPP--- 494

  Fly   804 GPRGLNGPRGEKGNQGAVGVPGNPGKDGLRGIPGRNGQPGPRGEPGISRPGPMGPPGLNGLQGEK 868
                  ||.|:||.   :|:||.||.||.:|..|:.|:|||.        ||:||||.:|:.|.|
 Frog   495 ------GPMGQKGE---IGLPGPPGHDGDKGPRGKPGEPGPL--------GPLGPPGKDGISGPK 542

  Fly   869 GDRGPTGPIGFPGADGSVGYPGDRGDAGLPGVSGRPGIVGEKGDVGPIGPAGVAGPPGVPGIDGV 933
            |:   .||.|.||:      .||:|:.|.||:.|..|..||.||      .||.|||||||:.|:
 Frog   543 GE---IGPRGLPGS------KGDKGETGSPGLDGPTGEKGEPGD------QGVPGPPGVPGLIGI 592

  Fly   934 RGRDGAKGEPGSPGLVGMPGNKGDRGAPGN--DGPKGFAGVTGAPGKRGPAGIPGVSGAKGDKGA 996
                        |||.|..|:.|::|..||  .||.|.|||:      ||.|.||.||.||:.||
 Frog   593 ------------PGLTGEKGDPGEKGESGNSVSGPPGPAGVS------GPVGPPGPSGQKGETGA 639

  Fly   997 TGLTGNDGPVGGRGPPGAPGLMGIKGDQGLAGAPGQQGLDGMPGEKGNQGFPGLDGPPGLPGDAS 1061
            .|..|:.|.               |||:|..|.||..||||..|.:      |:.||.|:||.|.
 Frog   640 AGEKGSQGE---------------KGDKGPMGLPGASGLDGRHGPR------GIPGPTGVPGPAG 683

  Fly  1062 EKGQKGEPGPSGLRGDTGPAGTPGWPGEKGLPGLAVHGRAGPPGEKGDQGRSGIDGRDGINGEKG 1126
            .||::|..|..|:   |||.|:      .|||||     .||||||               |.:|
 Frog   684 PKGERGNKGDPGV---TGPIGS------SGLPGL-----LGPPGEK---------------GSRG 719

  Fly  1127 EQGLQGVWGQPGEKGSVGAPGI--PGAPGMDGLP 1158
            |:|.:|..|..|:||..||||:  |...|.||||
 Frog   720 ERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLP 753

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Col4a1NP_723044.1 Collagen 104..161 CDD:189968
Collagen 322..380 CDD:189968 27/57 (47%)
Collagen 413..465 CDD:189968 27/79 (34%)
Collagen 499..561 CDD:189968 25/61 (41%)
Collagen 574..632 CDD:189968 28/59 (47%)
Collagen 657..714 CDD:189968 12/56 (21%)
Collagen 765..824 CDD:189968 17/61 (28%)
Collagen 854..911 CDD:189968 25/56 (45%)
Collagen 884..943 CDD:189968 22/58 (38%)
Collagen 923..982 CDD:189968 24/60 (40%)
Collagen 1028..1085 CDD:189968 24/56 (43%)
Collagen 1229..1287 CDD:189968
Collagen 1318..1376 CDD:189968
Collagen 1399..1458 CDD:189968
Collagen 1477..1534 CDD:189968
C4 1555..1662 CDD:128421
C4 1663..1777 CDD:128421
col13a1XP_031761170.1 Collagen 408..463 CDD:396114 35/113 (31%)
Collagen 635..682 CDD:396114 24/67 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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