Sequence 1: | NP_723044.1 | Gene: | Col4a1 / 33727 | FlyBaseID: | FBgn0000299 | Length: | 1779 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_031761170.1 | Gene: | col13a1 / 100498211 | XenbaseID: | XB-GENE-6462746 | Length: | 769 | Species: | Xenopus tropicalis |
Alignment Length: | 879 | Identity: | 332/879 - (37%) |
---|---|---|---|
Similarity: | 395/879 - (44%) | Gaps: | 282/879 - (32%) |
- Green bases have known domain annotations that are detailed below.
Fly 317 PEGDTGLDGQKGEKGLPGGPGDRGRQGNFGPPGSTGQKGDRGEPGLNGLPGNPGQKGEPGRAGAT 381
Fly 382 GKPGLLGPPGPPGGGRGTPGPPGPKGPRGYVGAPGPQGLNGVDGLPGPQGYNGQKGGAGLPGRPG 446
Fly 447 NEGPPGKKGEKGTAG---------LN-------------------GPKGSIGPIGHPGPPGPEGQ 483
Fly 484 KGDAGLPGYGIQGSKGDAGIPGYPGLKGSKGERGFKGNAGAPGDSKLGRPGTPGAAGAPGQKGDA 548
Fly 549 GRPGTPGQKGDMGIKGDVGGKCSSCRAGPKGDKGTSGLPGIPGKDGARGPPGERGYPGERGHDGI 613
Fly 614 NGQTGPPGEKGEDGRTG--LPGATGEPGKPALCDLSLIEPLKGDKGYPGAPGAKGVQGFKGAEGL 676
Fly 677 PGIPGPKGEFGFKGEKGLSGAPGNDGTPGRAGRDGYPGIPGQSIKGEPGFHGRDGAKGDKGSFGR 741
Fly 742 SGEKGEPGSCALDEIKMPAKGNKGEPGQ---TGMPGPPGEDGSPGERGYTGLKGNTGPQGPPGVE 803
Fly 804 GPRGLNGPRGEKGNQGAVGVPGNPGKDGLRGIPGRNGQPGPRGEPGISRPGPMGPPGLNGLQGEK 868
Fly 869 GDRGPTGPIGFPGADGSVGYPGDRGDAGLPGVSGRPGIVGEKGDVGPIGPAGVAGPPGVPGIDGV 933
Fly 934 RGRDGAKGEPGSPGLVGMPGNKGDRGAPGN--DGPKGFAGVTGAPGKRGPAGIPGVSGAKGDKGA 996
Fly 997 TGLTGNDGPVGGRGPPGAPGLMGIKGDQGLAGAPGQQGLDGMPGEKGNQGFPGLDGPPGLPGDAS 1061
Fly 1062 EKGQKGEPGPSGLRGDTGPAGTPGWPGEKGLPGLAVHGRAGPPGEKGDQGRSGIDGRDGINGEKG 1126
Fly 1127 EQGLQGVWGQPGEKGSVGAPGI--PGAPGMDGLP 1158 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Col4a1 | NP_723044.1 | Collagen | 104..161 | CDD:189968 | |
Collagen | 322..380 | CDD:189968 | 27/57 (47%) | ||
Collagen | 413..465 | CDD:189968 | 27/79 (34%) | ||
Collagen | 499..561 | CDD:189968 | 25/61 (41%) | ||
Collagen | 574..632 | CDD:189968 | 28/59 (47%) | ||
Collagen | 657..714 | CDD:189968 | 12/56 (21%) | ||
Collagen | 765..824 | CDD:189968 | 17/61 (28%) | ||
Collagen | 854..911 | CDD:189968 | 25/56 (45%) | ||
Collagen | 884..943 | CDD:189968 | 22/58 (38%) | ||
Collagen | 923..982 | CDD:189968 | 24/60 (40%) | ||
Collagen | 1028..1085 | CDD:189968 | 24/56 (43%) | ||
Collagen | 1229..1287 | CDD:189968 | |||
Collagen | 1318..1376 | CDD:189968 | |||
Collagen | 1399..1458 | CDD:189968 | |||
Collagen | 1477..1534 | CDD:189968 | |||
C4 | 1555..1662 | CDD:128421 | |||
C4 | 1663..1777 | CDD:128421 | |||
col13a1 | XP_031761170.1 | Collagen | 408..463 | CDD:396114 | 35/113 (31%) |
Collagen | 635..682 | CDD:396114 | 24/67 (36%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |