Sequence 1: | NP_723044.1 | Gene: | Col4a1 / 33727 | FlyBaseID: | FBgn0000299 | Length: | 1779 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_002933063.2 | Gene: | col4a2 / 100486079 | XenbaseID: | XB-GENE-5950101 | Length: | 1722 | Species: | Xenopus tropicalis |
Alignment Length: | 1871 | Identity: | 773/1871 - (41%) |
---|---|---|---|
Similarity: | 966/1871 - (51%) | Gaps: | 342/1871 - (18%) |
- Green bases have known domain annotations that are detailed below.
Fly 52 DDSYDIVDSAGVARGDLPPKNCTAGYAGCVPKCIAEKGNRGLPGPLGPTGLKGE---MGFPGMEG 113
Fly 114 PSGDKGQKGDPGPYGQRGDKGERGSPGLHGQAGVPGVQGPAGNPGAPGINGKDGCDGQDGIPGLE 178
Fly 179 GLSGMPGPRGYAGQLGSKGEKGEP---AKENGDYAKGEKGEPGWR---------GTAGLAGPQGF 231
Fly 232 PGEKGERGDSGPYGAKGPRGEHGL--KGEKGASCYGPMKPGAPGIKGEKGEPASSFPVKPTHTV- 293
Fly 294 ------MGPRGDMGQKGEPGLVGRKGEPGPEGDTGLDGQKGEKGLPGGPGDRGRQGNFGPPGSTG 352
Fly 353 QKGDRGEPGLNGLPGNPGQKGEPGRAGATGKPGLLGPPGPPGGGRGTPGPPGPKGPRGYVGAPGP 417
Fly 418 QGLNGVDGLPGPQGYNGQKGGAGLPGR-PGNEGPPGKKGEKGTAGLNGPKGSIGPIGHPGPPGPE 481
Fly 482 ---GQKGDAGLPGY-----------GIQGSKGDAGIPGYPGLKGSKGERG----------FKGNA 522
Fly 523 GAPGDSKLGRPGTPGAAGAPGQKGDAGRPGTPGQKGDMGI---------KGDVGGKCSSCRAGPK 578
Fly 579 GDKGTSGLPGIPGKDGARGPPGERGYPGERGHDGINGQTGPPGEKGEDGRTGLPGATGEPGKPAL 643
Fly 644 CDLSLIEPLKGDKGYPGAPGAKGVQGFKGAEGLPGIPGPKGEFGFKGEKGLSGAPGN-------- 700
Fly 701 -----DGT-------PGRAGRDGYPGIPG-QSIKGEPGF---HGRDGA---KGDKGSFGRSGEKG 746
Fly 747 EPGSCALDEIKMPAKGNKGEPGQTGMPGPPGEDGSPGERGYTGLKGNTGPQ--GPPGVEGPRGLN 809
Fly 810 GPRGEKGNQGAVGVPGNPGKDGLRGIPGRNGQPGPRGEPGISRPGPMGPPGLNGLQGEKGDRGPT 874
Fly 875 GPIGFPGADGSVGYPGDRGDAGLPGVSGRPGIVGEKGDVGPIGPAGVAGPPGVPGIDGVRGRDGA 939
Fly 940 KGEPGSPGLVGMPGNKGDRGAPGNDGPKGFAGVTGAPGKRGPAGIPGVSGAKGDKGATGLTGNDG 1004
Fly 1005 PVGGRGPPGAP-----------------------GLMGIKGDQGLAGAPGQQGLDGMP------- 1039
Fly 1040 GEKGNQGFPGLDGPPGLPGDASEKGQKGEPGPSGLRGDTGPAGTPGWPGEKGLPGLAVHGRAGP- 1103
Fly 1104 ---PGEKGDQGRS---GIDGRDGINGEK---GEQGLQGVWGQPGEKGSVGAPGIPGAPGMDGLPG 1159
Fly 1160 AAGAPGAVGYPGDRGDKGEPGLSGLPGLKGETGPVGLQGFTGAPGPKGERGIRGQPGLPATVPDI 1224
Fly 1225 RGDKGSQGERGYTGEKGEQGER----GLTGPAGVAGAKGDRGLQ---GPPGASGLNGIPGAKGDI 1282
Fly 1283 GPRGEIGYPGVTIKGEKGLPGRPGRNGRQGLIGAPGLIGERGLPGLAGEPGLVGLPGPIGPAGSK 1347
Fly 1348 GERGLAGSPGQ---PGQDGFPGAPGLKGDTGPQGFKGERGLNGFEGQK---GDKGDRGLQGPSGL 1406
Fly 1407 PGLVGQ----KGDTGYPGLNGNDGPVGAPGERGFTGPKGRDGRDGTPGLPGQKGEPGMLPPPGPK 1467
Fly 1468 GEPGQPGRNGPKGEPGRPGERGLIGIQGERGEKGERGLIGETGNVGRPGPKGDRGEPGERGYEGA 1532
Fly 1533 IGLIGQKGEPGAPAPAALDYLTGILITRHSQSETVPACSAGHTELWTGYSLLYVDGNDYAHNQDL 1597
Fly 1598 GSPGSCVPRFSTLPVLSCGQNNVCNYASRNDKTFWLTTNAAIPMMPVENIEIRQYISRCVVCEAP 1662
Fly 1663 ANVIAVHSQTIEVPDCPNGWEGLWIGYSFLMHTAVGNGGGGQALQSPGSCLEDFRATPFIECNGA 1727
Fly 1728 KGTCHFYETMTSFWMYNLESSQPFE-RPQQQTIKAGERQSHVSRCQVCMKN 1777 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Col4a1 | NP_723044.1 | Collagen | 104..161 | CDD:189968 | 26/59 (44%) |
Collagen | 322..380 | CDD:189968 | 27/57 (47%) | ||
Collagen | 413..465 | CDD:189968 | 23/52 (44%) | ||
Collagen | 499..561 | CDD:189968 | 30/71 (42%) | ||
Collagen | 574..632 | CDD:189968 | 25/57 (44%) | ||
Collagen | 657..714 | CDD:189968 | 26/76 (34%) | ||
Collagen | 765..824 | CDD:189968 | 27/60 (45%) | ||
Collagen | 854..911 | CDD:189968 | 20/56 (36%) | ||
Collagen | 884..943 | CDD:189968 | 29/58 (50%) | ||
Collagen | 923..982 | CDD:189968 | 29/58 (50%) | ||
Collagen | 1028..1085 | CDD:189968 | 26/63 (41%) | ||
Collagen | 1229..1287 | CDD:189968 | 26/64 (41%) | ||
Collagen | 1318..1376 | CDD:189968 | 23/60 (38%) | ||
Collagen | 1399..1458 | CDD:189968 | 27/62 (44%) | ||
Collagen | 1477..1534 | CDD:189968 | 15/56 (27%) | ||
C4 | 1555..1662 | CDD:128421 | 63/106 (59%) | ||
C4 | 1663..1777 | CDD:128421 | 71/114 (62%) | ||
col4a2 | XP_002933063.2 | Collagen | 95..149 | CDD:396114 | 26/56 (46%) |
Collagen | 509..563 | CDD:396114 | 21/55 (38%) | ||
Collagen | 539..602 | CDD:396114 | 26/71 (37%) | ||
Med15 | 728..>1034 | CDD:312941 | 130/329 (40%) | ||
Collagen | 1169..1224 | CDD:396114 | 28/65 (43%) | ||
Collagen | 1434..1490 | CDD:396114 | 31/97 (32%) | ||
C4 | 1501..1605 | CDD:396133 | 60/103 (58%) | ||
C4 | 1611..1719 | CDD:396133 | 68/109 (62%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 163 | 1.000 | Domainoid score | I3912 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 1 | 1.000 | - | - | H1390 | |
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D41315at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000443 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R2460 |
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
6 | 5.950 |