DRSC/TRiP Functional Genomics Resources

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Protein Alignment Col4a1 and col7a1

DIOPT Version :9

Sequence 1:NP_723044.1 Gene:Col4a1 / 33727 FlyBaseID:FBgn0000299 Length:1779 Species:Drosophila melanogaster
Sequence 2:XP_009300870.1 Gene:col7a1 / 100332562 ZFINID:ZDB-GENE-030131-2427 Length:3112 Species:Danio rerio


Alignment Length:1780 Identity:719/1780 - (40%)
Similarity:866/1780 - (48%) Gaps:306/1780 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 VIAGALVGADAQFWKTAGTAGSIQDSVKHYNRNEPKFPIDDSYDIVDSAGVARGDLPPKNCTAGY 77
            |:|..:..||....:.|.|.||.|:.:...:.|:......|..|::  .|:|||    ...|.| 
Zfish  1266 VLAVGVGRADPSELRLAVTDGSTQNLLYAQDANQLYGLHPDLADLL--CGLARG----TGVTTG- 1323

  Fly    78 AGCVPKC-------IAEKGNRGLPGPLGPTGLKGEMGFPGMEGPSGDKGQKGDPG-PYGQRGDKG 134
             .|..:|       ..|||.||..|..|..|..|..|.||.|||.|.:|..|.|| ..|.:|:||
Zfish  1324 -PCTVECPKGAKGERGEKGERGRDGVDGRKGEPGRDGLPGREGPRGPEGTPGQPGSSLGVKGEKG 1387

  Fly   135 ERGSPGLHGQAGVPGVQGPAGNPGAPGINGKDGCDGQDGIPGLEGLSGMPGPRGYAGQLGSKGEK 199
            |||.|||.|.:|:||..|..|.||:            .|:||:.|..|.||..|..|..|.|||:
Zfish  1388 ERGFPGLDGSSGIPGRSGAVGLPGS------------QGLPGIRGDPGEPGLIGPQGSKGEKGER 1440

  Fly   200 GEPAKENGDYAKGEKGEPGWRGTAGLAGPQGFPGEKGE---RGDSGPYGAKGPRGEHGL--KGEK 259
            ||.....|....|.|||||..|..|..|.||..|.|||   ||..|..|..|.:|..||  ||:|
Zfish  1441 GEAGSAIGGGLPGRKGEPGIPGIPGTPGRQGVNGAKGEPGARGLPGQDGRPGSQGTPGLSIKGDK 1505

  Fly   260 GASCYGPMKPGAPGI------KGEKGEPASSFPVKPTHTVMGPRGDMGQKGEPGLVGR--KGEPG 316
            |:    |.:.|.||:      ||:.|||.||.|..|    .||||..||||..|....  :|:||
Zfish  1506 GS----PGERGLPGVGSGVAAKGDPGEPGSSGPQGP----QGPRGVTGQKGAKGEPAESVEGQPG 1562

  Fly   317 PEGDTGLDGQKGEKGLPGGPGDRGRQGNFGPPGSTGQKGDR------------------GEPGLN 363
            |:|:||..|.:|.:|.||..|.:|.:|..|.|||.|.||||                  |..||.
Zfish  1563 PKGNTGDPGDRGPRGPPGESGTKGDRGQAGAPGSDGAKGDRGPSGPAGDKGDKGSAGPSGPQGLR 1627

  Fly   364 GLPGNPGQKGEPGRAGATGKPGLLGPPGPPG-----GGRGTPGPPGPKGPRGYVGAPGPQGLNGV 423
            ||||:.|..||.|..||.|:|| ...||..|     |.||.|||.|.||.:|.....|.:|..|.
Zfish  1628 GLPGSNGLPGEKGAEGAKGEPG-SSDPGSFGRKGERGERGFPGPAGAKGDKGDAAQKGERGAPGA 1691

  Fly   424 --DGLPGPQGYNGQKGGAGLPGRPGNEGPPGKKGEKGTAGLNGPKGSIGP--------------- 471
              .|.|||:|..|.:|..||.|:||.:|..|..||:|.||..|.:|.:||               
Zfish  1692 GEPGQPGPKGDQGDRGPGGLSGKPGAKGSQGDAGERGEAGSPGSQGPMGPRGKDGLKGDKGEDGI 1756

  Fly   472 IGHPGPPGPEGQKGDAGLPGY-GIQGSKGDA---------GIPGYPGLKGSKGERGFKGNAGAPG 526
            .|.||.||..|::|..||||. |..|:|||.         |.||..|.:|.||::|.:|..|.||
Zfish  1757 AGEPGLPGKPGERGLRGLPGQSGQPGTKGDTGDPGEDGRNGTPGTMGPRGPKGDQGIQGPPGPPG 1821

  Fly   527 D------------SKLGRPGTPGAAGAPGQKGDAGRPGT------PGQKGDMGIKGDVGGKCSSC 573
            |            .:.|..|.||..||.|.||:||..||      .||:|..|.:||.|.:.|  
Zfish  1822 DVTTGEKQLRGEKGEKGEAGDPGEHGAKGLKGEAGAQGTAGSSGPEGQRGLPGARGDPGDRGS-- 1884

  Fly   574 RAGPKGDKGTSGLPGIPGKDGARGPPGE---RGYPGER---GHDGINGQTGP------------- 619
             .|.||::|.:||.|.||:||..||||.   ||.||::   |.||:.|..||             
Zfish  1885 -PGEKGERGAAGLDGRPGQDGKPGPPGPPGLRGDPGKQGDPGRDGLAGLRGPQGPPGPPGPPGAD 1948

  Fly   620 --PGEKGEDGRTGLPGATGEPGKPALCDLSLIEPLKGDKGYPGAPGAKGVQGFKGAEGLPGIPGP 682
              ||:.||||::||||.|||.|.|.      .:..|||||..|..|..|..|.||..|:.|..||
Zfish  1949 GTPGKAGEDGKSGLPGKTGEDGVPG------EDGRKGDKGEQGPAGRDGRDGIKGDRGIAGPSGP 2007

  Fly   683 KGEFGFKGEKGLSGAPGN----------DGTPGRAGRDGYPGIPGQSIKGEPGFHGRDGAKGDKG 737
            :|..|..|..|..|.||:          .|.||..|..|.|||||  :.|..|..|..|..|.||
Zfish  2008 QGPVGPPGVPGNVGPPGSVVYVKGEPATPGPPGPQGPPGTPGIPG--VPGAGGARGERGLPGLKG 2070

  Fly   738 SFGRSGEKGEPGSCA------------LDEIKM-------------PAKGNKGEPGQTGMPGPPG 777
            ..|..||.|:||:.|            :.|:|.             ...|.|||.|:.|..||.|
Zfish  2071 DVGDPGEDGKPGTSADVKRALSDFGIEVRELKQLVDEKSVLMSRMSELSGKKGEKGEVGPRGPSG 2135

  Fly   778 EDGSPGERGYTGLKGNTGPQGPPGVEGPRGLNGPRGEKGNQGAVGVPGNPGKDGLRGIPGRNGQP 842
            .||:.|..|..|:||..|.:||.|.:||.|  ...||:|.:|..|..|.|||.|:.|:|||.|:.
Zfish  2136 ADGARGLPGERGMKGEQGEKGPAGPQGPTG--RAIGERGPEGPPGQAGEPGKPGIPGVPGRAGEL 2198

  Fly   843 GPRGEPGISRPGPMGPPGLNGLQGEKGDRGPTGPIGFPGADGSVGYPGDRGD-----AGLPGVSG 902
            |..|.           ||..|.:||:||:||.||.|.||..|.   ||.:||     :||||..|
Zfish  2199 GEAGR-----------PGEKGDKGERGDKGPAGPAGLPGLGGP---PGPKGDSASVQSGLPGPRG 2249

  Fly   903 RPGIVGEKGDVGPIGPAGVAGPPGVPGIDGVRGRDGAKGEPGSPGLVGMPGNKGDRGAPGND--- 964
            .||..|.:|:.|.:||   .|.||..|..|.||..|.||..|..|..|.||::|:.|.||.|   
Zfish  2250 LPGPAGVRGEPGAVGP---QGSPGERGYTGARGEKGDKGASGERGKDGSPGSQGESGKPGQDGKP 2311

  Fly   965 ------GPKGFAGVTGAPGKRGPA------GIPGVSGAKGDKG--ATGLTGNDGPVGGRGPPGAP 1015
                  ||.|.:|..|.||.|||.      |.||..|.|||.|  ..|:.|..||.|.||.||..
Zfish  2312 GLKGPAGPPGLSGNPGEPGIRGPTGPMGGNGPPGPPGVKGDHGEPGIGVQGPPGPQGNRGLPGPA 2376

  Fly  1016 GLMGIKGDQGLAGAPGQQGLDGMPGEKGNQGFPGLDGPPGLPGD------------ASEKGQKGE 1068
            |..|..|.||..|.|||.|..|.||..|..|.||.||.|||.|.            ..|:|..|.
Zfish  2377 GTPGAIGPQGPQGLPGQVGEGGKPGVPGRDGAPGKDGLPGLNGKQGIAGPVGPQGLKGEQGDSGP 2441

  Fly  1069 P-----GPSGLRGDTGPAG--TPGWPGEKGLPGL----------AVHGRAGPPGEKGDQGRSGID 1116
            |     ||.|::|:.||.|  .||.|||.|||||          .:.|..|..|:.||.|.:|:.
Zfish  2442 PGKSVTGPPGMKGEMGPPGQTLPGTPGESGLPGLQGPKGDKGPAGIKGERGAAGDPGDPGENGVR 2506

  Fly  1117 GRDGINGEKGEQGLQGVWGQPGEKGSVGAPGIPGAPGMDGLPGAAGAPGAVGYPGDRGDKGEPGL 1181
            |..|..|.|||.|: |:.|.||:.|.:|..|.||.||..|.||..|..|..|..|.||:.|:||.
Zfish  2507 GPPGPKGVKGEAGV-GMTGPPGQPGPIGLKGDPGLPGPPGPPGPRGLDGTPGLAGQRGEAGQPGP 2570

  Fly  1182 SGLPGLKGETGPVGLQGFTGAP---GPKGERGIRGQPGLPAT-------VPDIRGDKGSQGERGY 1236
            .||||.:|..|.:|..|..|.|   ||.|..|..|.|||...       ||..||::|..|.||.
Zfish  2571 PGLPGERGLNGIIGKTGNPGTPGDAGPPGPTGAAGLPGLKGDKGEIGVGVPGQRGERGDPGPRGE 2635

  Fly  1237 TGEKGEQGERGLTGPAGVAGAKGDRGLQGPPGASGLNGIPGAKGDI----GPRGEIGYPGVTIKG 1297
            .|..|..||||.|||.|..|.:||:|.|||      :||.|.||:.    ||.||.|..|.|  |
Zfish  2636 EGRAGADGERGTTGPPGSKGNRGDKGEQGP------SGIKGEKGETQLVGGPPGEKGVKGET--G 2692

  Fly  1298 EKGLPGRPGRNGRQGLIGAPGLIGERGLPGLAGEPGLVGLPGPIGPAGSKGERGLAGSPGQ---P 1359
            |:|..|..|..|.:|..|.|   ||:||.|..||.|..|..|..||.|.|||.|..|.||:   |
Zfish  2693 ERGPKGGQGEKGAKGQEGPP---GEQGLRGEQGERGSTGFQGARGPGGQKGEAGQPGVPGEAGTP 2754

  Fly  1360 GQDGFPGAPGLKGDT---GPQGFKGERGLNGF---EGQKGDKGDRGLQGPSGLPGLVGQKGDTGY 1418
            |:||.||..|.||:.   |.:|.|||||..|.   .||||||||.|:.|..||||..|::|:.|.
Zfish  2755 GKDGLPGMRGEKGEVGLIGLRGLKGERGSKGVCGPSGQKGDKGDSGINGRPGLPGRKGEQGEVGL 2819

  Fly  1419 PGLNGNDGPVGAPGERGFTGPKGRDGRDGTPGLPGQKGEPGMLPPPGPKGEPGQPGRNGPKGEPG 1483
                  .||:|:||:.|..|.||..|.||..|..|.:||.|...|||..|.||..|.:||.|..|
Zfish  2820 ------QGPIGSPGKEGLIGAKGDRGFDGVTGPKGAQGEKGERGPPGIPGSPGPRGVDGPPGLTG 2878

  Fly  1484 RPGERGLIGIQGERGEKGERGLIGETGNVGRPGPKGDRGEPGERGYEGAIGLIGQKGEPGAPAPA 1548
            ..|..|..|.:|.:|:|||||..|.    |..||:|..|.|||||.:|.||..|.||:.|...  
Zfish  2879 PQGPAGGKGPEGLQGQKGERGPPGP----GMVGPRGTPGIPGERGEQGEIGPEGSKGDRGEAG-- 2937

  Fly  1549 ALDYLTGILITRHSQSETVPACSAG 1573
                :|...|..:.:||....|:.|
Zfish  2938 ----MTEDEIRTYVRSEMNQHCACG 2958

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Col4a1NP_723044.1 Collagen 104..161 CDD:189968 30/57 (53%)
Collagen 322..380 CDD:189968 29/75 (39%)
Collagen 413..465 CDD:189968 22/53 (42%)
Collagen 499..561 CDD:189968 31/88 (35%)
Collagen 574..632 CDD:189968 32/78 (41%)
Collagen 657..714 CDD:189968 23/66 (35%)
Collagen 765..824 CDD:189968 26/58 (45%)
Collagen 854..911 CDD:189968 27/61 (44%)
Collagen 884..943 CDD:189968 27/63 (43%)
Collagen 923..982 CDD:189968 29/67 (43%)
Collagen 1028..1085 CDD:189968 29/75 (39%)
Collagen 1229..1287 CDD:189968 28/61 (46%)
Collagen 1318..1376 CDD:189968 29/63 (46%)
Collagen 1399..1458 CDD:189968 24/58 (41%)
Collagen 1477..1534 CDD:189968 26/56 (46%)
C4 1555..1662 CDD:128421 5/19 (26%)
C4 1663..1777 CDD:128421
col7a1XP_009300870.1 vWFA 33..196 CDD:294047
fn3 225..309 CDD:278470
FN3 335..409 CDD:238020
FN3 415..495 CDD:238020
FN3 505..577 CDD:214495
fn3 592..660 CDD:278470
FN3 680..>740 CDD:238020
FN3 776..854 CDD:238020
fn3 862..938 CDD:278470
fn3 953..1021 CDD:278470
fn3 1040..1120 CDD:278470
VWA 1134..1300 CDD:278519 10/33 (30%)
Collagen 1335..1393 CDD:189968 27/57 (47%)
Collagen 1405..1462 CDD:189968 26/68 (38%)
Collagen 1450..1511 CDD:189968 28/64 (44%)
Collagen 1483..1553 CDD:189968 33/77 (43%)
Collagen 1586..1644 CDD:189968 22/57 (39%)
Collagen 1653..1708 CDD:189968 22/54 (41%)
Collagen 1692..1749 CDD:189968 23/56 (41%)
Collagen 1725..1782 CDD:189968 21/56 (38%)
Collagen 1758..1809 CDD:189968 21/50 (42%)
Collagen 1835..1894 CDD:189968 25/61 (41%)
Collagen 2120..2180 CDD:189968 28/61 (46%)
Collagen 2156..2216 CDD:189968 29/72 (40%)
Collagen 2243..2297 CDD:189968 25/56 (45%)
Collagen 2276..2330 CDD:189968 21/53 (40%)
Collagen 2362..2420 CDD:189968 30/57 (53%)
Collagen 2410..2473 CDD:189968 24/62 (39%)
Collagen 2457..2518 CDD:189968 25/60 (42%)
Collagen 2596..2657 CDD:189968 27/60 (45%)
Collagen 2661..2724 CDD:189968 31/73 (42%)
Collagen 2704..2761 CDD:189968 28/59 (47%)
Collagen 2734..2792 CDD:189968 27/57 (47%)
Collagen 2788..2846 CDD:189968 29/63 (46%)
KU 3057..3110 CDD:238057
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BAFZ
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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