DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Col4a1 and col5a2b

DIOPT Version :9

Sequence 1:NP_723044.1 Gene:Col4a1 / 33727 FlyBaseID:FBgn0000299 Length:1779 Species:Drosophila melanogaster
Sequence 2:XP_001920005.4 Gene:col5a2b / 100006366 ZFINID:ZDB-GENE-110406-2 Length:1499 Species:Danio rerio


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Col4a1NP_723044.1 Collagen 104..161 CDD:189968
Collagen 322..380 CDD:189968
Collagen 413..465 CDD:189968
Collagen 499..561 CDD:189968
Collagen 574..632 CDD:189968
Collagen 657..714 CDD:189968
Collagen 765..824 CDD:189968
Collagen 854..911 CDD:189968
Collagen 884..943 CDD:189968
Collagen 923..982 CDD:189968
Collagen 1028..1085 CDD:189968
Collagen 1229..1287 CDD:189968
Collagen 1318..1376 CDD:189968
Collagen 1399..1458 CDD:189968
Collagen 1477..1534 CDD:189968
C4 1555..1662 CDD:128421
C4 1663..1777 CDD:128421
col5a2bXP_001920005.4 VWC 36..91 CDD:278520
Collagen 231..288 CDD:189968
Collagen 264..325 CDD:189968
Collagen 378..437 CDD:189968
Collagen 438..495 CDD:189968
Collagen 468..526 CDD:189968
Collagen 498..555 CDD:189968
Collagen 531..590 CDD:189968
Collagen 588..647 CDD:189968
Collagen 690..747 CDD:189968
Collagen 777..834 CDD:189968
Collagen 862..914 CDD:189968
Collagen 1092..1149 CDD:189968
COLFI 1266..1498 CDD:279718
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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