Sequence 1: | NP_001260071.1 | Gene: | vkg / 33726 | FlyBaseID: | FBgn0016075 | Length: | 1940 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_082046.2 | Gene: | Col24a1 / 71355 | MGIID: | 1918605 | Length: | 1733 | Species: | Mus musculus |
Alignment Length: | 1662 | Identity: | 534/1662 - (32%) |
---|---|---|---|
Similarity: | 660/1662 - (39%) | Gaps: | 554/1662 - (33%) |
- Green bases have known domain annotations that are detailed below.
Fly 58 LEGPAGDIGPPGRAGPLGEKGDVGEYGEQGEKGHRGDIGPKGEMGYPGIMGKSGEPGTPGPRGID 122
Fly 123 GCDGRPGMQGPSGAPGQNGVRGPPGKPGQQGPPGEAGEGGINSKGTKGNRGETGQPGGVGPPGFD 187
Fly 188 GDRGSKGDTGYAGLTGEKGDPGLPGPKGDTGAVSELPYSLIGPPGAKGEPGDSLSGVLKPDDTLK 252
Fly 253 GYKGYVGLQGDEGPQGPTGEQGAVGRNGLPGARGEIGGPGERGKPGKDGEPGRFGDKGMKGAPGW 317
Fly 318 TGADGLDGSPGERGEDGFTGMPGVQGGAGPPGIYDPSLTKSLPGPIGSQGDIGPPGEQGPPGLPG 382
Fly 383 KPGRRGPIGLAGQSGDPGLNGSRGPPGRSERGEAGDYGFIGPPGPQGPPGEAGLPGRYGLHGEPG 447
Fly 448 QNVVGPKGEPGLNGQPGLEGYRGDRGEVGLPGDKGLPGEGYNIVGP---PGSQGPPGFRGLPGDD 509
Fly 510 GYNGLRGLPGEKGLRGDDCPVCNAGPRGPRGQEGDTGYPGSHGNRGAIGLTGPRGVQGLQGNPGR 574
Fly 575 AGHKGLPGPAGIPGEPGKVGAAGPDGKAIEVGSLRKGEIGDTGDSGHRGDTGD---DGEKGRDGS 636
Fly 637 DGSKGERGETGQRGDYGDAGYQGRDGEPGRDGRDGAPGRNATTPKVYLIGEPGYDGIKGERGDDG 701
Fly 702 DTGFKGVKGEPNPGQIYDNTGEPGEDGYTGPKGVKGAKGEQGAIGLRGEIGDRGPAGEVIPGPVG 766
Fly 767 AKGYPGPTGDYGQQGAPGLPGRDGEPGLDGGIGYKGQRGVPGQEVIQGEIGPPGRSGIKGFPGDV 831
Fly 832 GAPGQYGLAGRPGPKGVKGEQGPDGAVGQTGLPGNKGQRGDFLVGPPGPKGQPGRNGRQAPHGAK 896
Fly 897 GQKGEVGSLGQNGQNGAKGSIGFSGRRGLLGNAGLQGLPGSPGIPGLPGMIGEIGERGEIGYNGR 961
Fly 962 QGDIGPRGPNGEFGPKGLSGDDGPDGYPGANGLPGRKGETGNPGFPGRPGAKGVAAYSGIKGDDG 1026
Fly 1027 ESGLTGPIGYPGAPGAKGQRGPVGDSQPALDGVAGRKGEVGSPGPNGLPGRHGLKGQRGDRGLPG 1091
Fly 1092 QQGRPGEPGAKGLGGYPGRNGINGLKGATGFPGPQ----GPKGPQGESGVVGLDGRNGQIGDQGP 1152
Fly 1153 RGLIGEQGEQGEQGDEGEVGIPGRLENLRDRSFYRGFTGDQGLQGERGEQGDMGPIGFIGPPGAK 1217
Fly 1218 GERGDIGYAGQLGFDGAEGLKGFQGDQGPRGPPGITLPAEKGDEGVAGLDGRAGRPGHFGQKGAP 1282
Fly 1283 GPPGENGPNGAIGHRGPQIQGPPGPQGDVGFPGAPGHNGRHGLIGPKGELGDMGRQGERGESGYA 1347
Fly 1348 IVGRQGDIGDIGFQGEPGWDGAKGEQGYPGLPGKNGRVGAPGPRGPTGDAGWGGIDGMDGLVGPK 1412
Fly 1413 GQPGVTYSYSMARPGDRGEPGLDGFQGEEGDGGAPGLIGFQGQRGAVGYRGDQGEVGYTGADGPQ 1477
Fly 1478 GQRGDKGYMGLTGAPGLRGLPGPQGEP-APAPPAPKSRGFIFARHSQSVHVPQCPANTNLLWEGY 1541
Fly 1542 SLSGNVAASRAVGQDLGQSGSCMMRFTTMPYMLCDITNVCHFAQN---------------NDDSL 1591
Fly 1592 WLSTAEP-----------------------MPMTMTPIQ---GRDLMKYISRCVVCETTTRIIAL 1630
Fly 1631 HSQSMSIPDCPGGWEE---------MWTGYSYFMSTL 1658 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
vkg | NP_001260071.1 | Collagen | 60..119 | CDD:189968 | 20/58 (34%) |
Collagen | 102..152 | CDD:189968 | 20/49 (41%) | ||
Collagen | 277..334 | CDD:189968 | 22/56 (39%) | ||
Collagen | 534..593 | CDD:189968 | 25/58 (43%) | ||
Collagen | 814..871 | CDD:189968 | 25/56 (45%) | ||
Collagen | 957..1014 | CDD:189968 | 19/56 (34%) | ||
Collagen | 990..1049 | CDD:189968 | 18/58 (31%) | ||
Collagen | 1070..1128 | CDD:189968 | 26/61 (43%) | ||
C4 | 1515..1624 | CDD:128421 | 18/149 (12%) | ||
C4 | 1625..1737 | CDD:128421 | 9/43 (21%) | ||
Col24a1 | NP_082046.2 | LamG | 41..230 | CDD:389952 | |
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 257..335 | ||||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 505..1499 | 507/1473 (34%) | |||
Collagen | 531..594 | CDD:189968 | 31/85 (36%) | ||
Collagen | 577..634 | CDD:189968 | 32/94 (34%) | ||
Collagen | 613..670 | CDD:189968 | 28/83 (34%) | ||
Collagen | 722..771 | CDD:189968 | 26/92 (28%) | ||
Glutenin_hmw | <931..1424 | CDD:367362 | 241/697 (35%) | ||
Collagen | 1397..1454 | CDD:189968 | 33/103 (32%) | ||
COLFI | 1550..1732 | CDD:382971 | 18/132 (14%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |