DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vkg and col9a3

DIOPT Version :10

Sequence 1:NP_477190.1 Gene:vkg / 33726 FlyBaseID:FBgn0016075 Length:1940 Species:Drosophila melanogaster
Sequence 2:NP_001292502.1 Gene:col9a3 / 567110 ZFINID:ZDB-GENE-030131-9799 Length:679 Species:Danio rerio


Alignment Length:879 Identity:314/879 - (35%)
Similarity:376/879 - (42%) Gaps:263/879 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 GNRGETGQPGGVGPPGFDGDRGSKGDTGYAGLTGEKGDPGLPGPKGDTGAVSELPYSLIGPPGAK 234
            |.||..|.||..||||.|   |..|.||.|||      ||.|||||..|..           ||.
Zfish    26 GPRGAPGLPGPPGPPGKD---GIDGKTGPAGL------PGKPGPKGKAGKA-----------GAA 70

  Fly   235 GEPGDSLSGVLKPDDTLKGYKGYVGLQGDEGPQGPTGEQGAVGRNGLPGARGEIGGPGERGKPGK 299
            |.||            |.|..|..||.|.:||         .|::|.|||      ||:.|.||.
Zfish    71 GSPG------------LPGLPGVDGLTGPDGP---------AGKDGPPGA------PGDSGPPGP 108

  Fly   300 DGEPGRFGDKGMKGAPGWTGADGLDGSPGERGEDGFTGMPGVQGGAGPPGIYDPSLTKSLPGPIG 364
            ||.|||    |..||.|..||:||                  .|||||.                
Zfish   109 DGPPGR----GRPGALGLAGANGL------------------PGGAGPQ---------------- 135

  Fly   365 SQGDIGPPGEQGPPGLPGKPGRRGPIGLAGQSGDPGLNGSRGPPGRSERGEAGDY--GFIGPPGP 427
                 ||||.:|.|||||.||..||         |||      ||....| :||.  ..|.||||
Zfish   136 -----GPPGPEGLPGLPGLPGTDGP---------PGL------PGTLPEG-SGDLLCPAICPPGP 179

  Fly   428 QGPPGEAGLPGRYGLHGEPGQNVVGPKGEPGLNGQPGLEGYRGDRGEVGLPGDKGLPGEGYNIVG 492
            .||||..|..|.                          .|::|.:||:|..|:|           
Zfish   180 PGPPGMPGFKGH--------------------------TGHKGSKGELGKDGEK----------- 207

  Fly   493 PPGSQGPPGFRGLPGDDGYNGLRGLPGEKGLRGDDCPVCNAGPRGPRGQEGDTGYPGSHGNRGAI 557
              |.|||||..|:||..|..|.|||   :||:|   ||...|.||..|..|..|..|..|..|.:
Zfish   208 --GDQGPPGPPGVPGTVGLQGSRGL---RGLQG---PVGAVGDRGIPGSRGKPGIAGIIGKTGDV 264

  Fly   558 GLTGPRGVQGLQGNPGRAGHKGLPGPAGIPGEPGKVGAAGPDG-KAIEVGSLRKGEIGDTGDSGH 621
            |..||:|.:|.:|..|:.|.||:||.||..||||..|..|.|| :.::      ||.||.|.:|.
Zfish   265 GEKGPQGFKGPKGEIGKIGPKGVPGGAGPKGEPGIPGRDGKDGTQGLD------GEKGDAGRAGV 323

  Fly   622 RGDTGDDGEKGRDGSDGSKGERGETGQRGDYGDAGYQGRDGEPGRDGRDGAPGRNATTPKVYLIG 686
            .|:.|.:|..|..|..|:||.:|..|..|:.|:|   |..|||                     |
Zfish   324 AGEKGPNGLPGLPGKAGAKGAKGGVGNPGEMGEA---GPSGEP---------------------G 364

  Fly   687 EPGYDGIKGERGDDGDTGFKGVKGEPNPGQIYDNTGEPGEDGYTGPKGVKGAKGEQGAIGLRGEI 751
            .||..||.||||:.|..|..|..|.|.      |||..|..|:.|.||..|..|..|..|:||..
Zfish   365 IPGEIGIPGERGEAGGRGVAGGVGVPG------NTGPQGVKGFQGVKGALGDPGLPGPTGIRGGF 423

  Fly   752 GDRGPAGEVIPGPVGAKGYPGPTGDYGQQGAPGLPGRDGEPGLDGGIGYKGQRGVPGQEVIQGEI 816
            |:|||.|.           .||.||.|..|:.||||.:||||..|.:|.||:.|..|:...:|.:
Zfish   424 GERGPGGA-----------GGPKGDMGVAGSDGLPGENGEPGPYGPVGQKGEPGKHGELGSKGVV 477

  Fly   817 GPPGRSGIKGFPGDVGAPGQYGLAGRPGPKGVKGEQGPDGAVGQTGLPGNKGQRGDF--LVG--- 876
            ||.|.:|.:|.|            |:|||.|::||||..|..|:||:||........  |.|   
Zfish   478 GPQGETGARGVP------------GKPGPMGLQGEQGFPGVAGKTGVPGKLASEQHIRELCGSMI 530

  Fly   877 ---------------PPGPKGQPGRNGRQAPHGAKGQKGEVGSLGQNGQNGAKGSIGFSGRRGLL 926
                           .||..|:||      |.|..|::|||||:|..|.               |
Zfish   531 DDQIAQLAANLRRPLAPGAVGRPG------PPGPPGEQGEVGSIGHPGS---------------L 574

  Fly   927 GNAGLQGLPGSPGIPGLPGMIGEIGERGEIGYNGRQGDIGPRGPNGEFGPKGLSGDDG--PDGYP 989
            |..|.:||||..|.||..|.:||.|::|.||.       ...||.|:.|..||.|.||  .||..
Zfish   575 GPPGYRGLPGDLGDPGPRGDVGEAGDKGPIGK-------AVEGPTGDQGDHGLPGVDGIIKDGRD 632

  Fly   990 GANGLPGRKGETGNPGFPGRPGAKGVAAYSGIKG 1023
            ||.|.||..||.|..|.||..|:.|:...:..:|
Zfish   633 GAPGDPGESGEPGRSGRPGHQGSPGICDTTACQG 666

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vkgNP_477190.1 gly_rich_SclB <63..>349 CDD:468478 67/178 (38%)
gly_rich_SclB <465..>712 CDD:468478 93/247 (38%)
gly_rich_SclB <637..>871 CDD:468478 87/233 (37%)
gly_rich_SclB <894..>1132 CDD:468478 51/132 (39%)
gly_rich_SclB <1078..>1342 CDD:468478
gly_rich_SclB <1228..1515 CDD:468478
C4 1515..1624 CDD:128421
C4 1625..1737 CDD:128421
col9a3NP_001292502.1 gly_rich_SclB <138..>363 CDD:468478 109/294 (37%)
gly_rich_SclB <272..>517 CDD:468478 116/303 (38%)
gly_rich_SclB <559..>671 CDD:468478 50/130 (38%)
Blue background indicates that the domain is not in the aligned region.

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