DRSC/TRiP Functional Genomics Resources

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Protein Alignment vkg and col4a1

DIOPT Version :9

Sequence 1:NP_001260071.1 Gene:vkg / 33726 FlyBaseID:FBgn0016075 Length:1940 Species:Drosophila melanogaster
Sequence 2:XP_694040.5 Gene:col4a1 / 554269 ZFINID:ZDB-GENE-081105-114 Length:1640 Species:Danio rerio


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vkgNP_001260071.1 Collagen 60..119 CDD:189968
Collagen 102..152 CDD:189968
Collagen 277..334 CDD:189968
Collagen 534..593 CDD:189968
Collagen 814..871 CDD:189968
Collagen 957..1014 CDD:189968
Collagen 990..1049 CDD:189968
Collagen 1070..1128 CDD:189968
C4 1515..1624 CDD:128421
C4 1625..1737 CDD:128421
col4a1XP_694040.5 Collagen 62..119 CDD:189968
Collagen 580..643 CDD:189968
Collagen 708..759 CDD:189968
Collagen 817..875 CDD:189968
Collagen 919..978 CDD:189968
Collagen 952..1009 CDD:189968
Collagen 1047..1106 CDD:189968
Collagen 1086..1143 CDD:189968
Collagen 1144..1201 CDD:189968
Collagen 1210..1269 CDD:189968
C4 1417..1523 CDD:279721
C4 1527..1637 CDD:279721
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 136 1.000 Domainoid score I4876
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D41315at33208
OrthoFinder 1 1.000 - - FOG0000443
OrthoInspector 1 1.000 - - otm25044
orthoMCL 1 0.900 - - OOG6_100768
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.820

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