DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vkg and col4a6

DIOPT Version :9

Sequence 1:NP_001260071.1 Gene:vkg / 33726 FlyBaseID:FBgn0016075 Length:1940 Species:Drosophila melanogaster
Sequence 2:XP_017212581.1 Gene:col4a6 / 554268 ZFINID:ZDB-GENE-101001-2 Length:1717 Species:Danio rerio


Alignment Length:1875 Identity:750/1875 - (40%)
Similarity:920/1875 - (49%) Gaps:323/1875 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 VVYLLGSLVSVTLAD---GKICNTTLCDCKGIKGRMGAPGPIGVPGLEGPAGDIGPPGRAGPLGE 76
            |:|.:.:....||.:   |:.|:.. |.|..:||..|.||.:|..|..||.|..|.|   ||:|.
Zfish    11 VLYAVSAQGGSTLQEPCAGRDCSGP-CPCFPLKGGRGQPGELGPVGSGGPEGFYGGP---GPVGP 71

  Fly    77 KGDVGEYGEQGEKGHRGDIGPKGEMGYPGIMGKSGEPGTPGPR---GIDGCDGRPGMQGPSGAPG 138
            |.:.|..|.:|..|..||.||.|..||||..|..|.||..|||   |:|||:|..|..|.||..|
Zfish    72 KAEQGHIGRKGPPGQNGDKGPMGVPGYPGNDGVPGHPGQEGPRGPPGLDGCNGTQGDTGYSGLDG 136

  Fly   139 QNGVRGPPGKPGQQGPPGEAGEGGINSKG--TKGNRGETGQPGGVGPPGFDGDRGSKGDTGYAGL 201
            .:|:.|.||.||.:|..||.....|.|:.  |:|..|..|.||.:||      ||..|..|..||
Zfish   137 YSGIPGSPGFPGLKGQKGEPSYLNIPSQNILTQGPPGPQGYPGPIGP------RGPDGFDGLPGL 195

  Fly   202 TGEKGDPGLPGP--KGDTGAVSELPYSLIGPPGAKGEP-----GDSLSGVLKPDDTLKGYKGYVG 259
            .|..|.||.||.  ||:.|...:     :||.|.:|.|     ..::|.:.|            |
Zfish   196 PGPPGPPGSPGQGYKGEPGEKGD-----VGPQGVRGNPSVQFNAPAISTINK------------G 243

  Fly   260 LQGDEGPQGPTGE---QGAVGRNGLP----GARGEIGGPGERGKPGKDGE------PGRFGDKGM 311
            .:||.||.|..|.   .|.|...|:|    |.:|:.|..|..|.||:.|.      ||..|:||:
Zfish   244 EKGDVGPPGDPGHPLVNGVVEFVGIPKADKGIQGDKGYAGNPGLPGRQGPVNPFRYPGEVGEKGI 308

  Fly   312 KGAPGWTGADGLDGSPGERGEDGFT---GMPGVQGGAGPPG-IYDPSLTKSLPGPI--------- 363
            .|.||..|..||:|.||..|..|||   |.||..|..||.| |.||    ..||||         
Zfish   309 LGLPGGRGPPGLNGPPGLPGRKGFTGSEGFPGQPGLNGPKGDIGDP----GPPGPIVDSPVFEIK 369

  Fly   364 GSQGDIGPPGEQGPP------GLPGKPGRRGPIG-LAGQSGDPGLNGSRGPPGRSERGEAG--DY 419
            ||:||.|.||..|.|      ||||:||..||.. ..|:.|.||..|||||.|  :||..|  .|
Zfish   370 GSKGDRGFPGYPGFPGDTGYGGLPGQPGAPGPPAFFTGRPGAPGFPGSRGPKG--QRGNPGRDSY 432

  Fly   420 GFIGPPGPQGPPGEAGLPGRYGLHGEPGQN---VVGPKGEPGLNGQPGLEGYRGDRGEVGLPGDK 481
            |..|.||.||..|..|||      |.||.:   :|.|.  ||..||||..|..|.:|..|..|:.
Zfish   433 GSEGLPGSQGLSGPPGLP------GPPGTSSNFIVTPL--PGFPGQPGPRGPFGSQGIKGFKGEN 489

  Fly   482 G----LPGEGYNIVGPPGSQGPPGFRGLP------GDDGYNGLRGLPGEKGLRGDDCPVCNAGPR 536
            |    |.|......||||..|.|||.||.      ||:||.||.|..|.:|.|||      .|..
Zfish   490 GDCNCLGGGTIGAQGPPGPPGFPGFIGLNGLKGEIGDNGYQGLPGPQGPQGRRGD------RGFN 548

  Fly   537 GPRGQEGDTGYPGSHGNRGAIGLTGPRGVQGLQGNPGRAGHKGLPGPAGIPGEPGKVGAAGPDGK 601
            |.:|::|:..:|...|.:|.:|..||.|..|...:|||.|..|.||..|:||||| .|..|..|.
Zfish   549 GRKGEKGNAFFPQGKGQKGDLGQQGPPGPLGFSNSPGRDGSPGFPGQPGLPGEPG-FGLTGDKGF 612

  Fly   602 AIEVGSLRKGEIGDTGDS--GHRGDTGDDGEKGRDGSDGSKGERGETGQRGD------------- 651
            ....||  ||..|.:|:.  |:.|..|..|.:|..|.:|..|..|..|.:||             
Zfish   613 PGIPGS--KGRPGASGEPGIGYPGVAGFKGMQGEPGFNGLPGPPGPPGSKGDSCRQAGLIDASLE 675

  Fly   652 -------------YGDAGYQGRDGEPGRDGRDGAPGRNATTPKVYLIGEPGYDGIKGERGDDGDT 703
                         .||.|:.||.|.||..||.|:.|.|         |.||:||.||||      
Zfish   676 EGGTPLPCRLPGIQGDKGFPGRPGVPGPKGRVGSAGLN---------GRPGFDGSKGER------ 725

  Fly   704 GFKGVKGEPNPGQIYDNTGEPGEDGYTGPKGVKGAKGE-----QGAIGLRGEIGDRGPAGE---- 759
                  |||..|      |.||..|:.||:|..|..|.     ||:.|..|..|..||.||    
Zfish   726 ------GEPGSG------GRPGPQGFPGPRGDAGLPGTTNIGLQGSPGRDGFPGSPGPKGEPGAV 778

  Fly   760 --VIPGPVGAKGYPGPTGDYGQQGAPGLPGRDGEPGLDGGIGYKGQRGVPGQEVIQGEIGPPGRS 822
              ..||.:|.:|.||..||.||.|.||.||..|..|.:|..|.||:|||.|   :.|.:||    
Zfish   779 LGATPGDLGRQGRPGEPGDKGQPGVPGFPGNPGVDGRNGFPGIKGERGVNG---LPGPVGP---- 836

  Fly   823 GIKGFPGDVGAPGQYGLAGRPGPKGVKGEQGPDGAVGQTGLPGNKGQRGDFLVGPPGPKGQPGRN 887
                    :|.||:....|.|||:|..|.:|.||..|..|.||.||.|||  .|||||.|..|..
Zfish   837 --------IGPPGELPQGGIPGPRGPPGAKGFDGPPGCQGFPGLKGMRGD--PGPPGPGGIKGIQ 891

  Fly   888 GRQAPHGAKGQKGEVGSLGQNGQNGAKGSIGFSGRRGLLGNAGLQGLPGSPGIPGLPGMIGEIGE 952
            |.....|::|.:|..|..|...::|..|..|..|.:|.||..|.|||||||||||.||:.|..|.
Zfish   892 GIPGIPGSQGFRGPPGPTGFTERDGIPGRPGIKGEKGSLGLLGFQGLPGSPGIPGGPGIKGLPGF 956

  Fly   953 RGEIGYNGRQGDIGPRGPNGEFGPKG-----------LSGDDGPDGYPGANGLPGRKGETGNPGF 1006
            ||:.|..||.|..||||..||.||.|           :.|:.|..|..|..|..|::|:.|.||.
Zfish   957 RGQDGLIGRDGPRGPRGDRGEPGPPGPSTPPIPVERLVKGEPGEPGIVGGPGFTGQRGDKGFPGP 1021

  Fly  1007 PGRPG----------AKGVAAYSGIKGDDGESGLTGPIGYPGAPGAKGQRGPVGDS-QPALDGVA 1060
            |||||          |||:....||.|..|.||..||.|:||..|..|..|..||: .|.:.|..
Zfish  1022 PGRPGFPGPPGFADQAKGLPGQPGIPGVPGSSGFPGPKGFPGVMGFPGFSGVKGDNGVPGVPGFP 1086

  Fly  1061 GRKGEVGSPGPNG----LPGRHGLKGQRGDRGLPGQQGRPGEPGAKGLG---GYPGRNGINGLKG 1118
            |.:|..|:.|..|    ..|..|.||..|:.|.||..|||||||..|..   ||.|:.|..|..|
Zfish  1087 GAQGPPGAKGEKGDSYASSGPTGPKGNIGNSGFPGGPGRPGEPGDSGFPGVLGYQGQKGFPGDPG 1151

  Fly  1119 ATGFPGPQGPKGPQGESGVVGLDGRNGQIGDQGPRGLIGEQGEQGE---------QGDEGEVGIP 1174
            ..||.|..||.||:|..|..||.||:|..|..|..||.|::|..|.         .|..|..|:|
Zfish  1152 IPGFVGSSGPPGPRGLPGYPGLRGRDGDPGRPGGPGLPGDKGFPGSPGLDGLNGLPGSRGPPGVP 1216

  Fly  1175 GRLENLRDRSFYRGFTGDQGLQGERGEQGDMGPIGFIGPPGAKGERGDIGYAGQLGFDGAEGLKG 1239
            |.:|.        |..|..|:.|::||:|...| |..|.||.||.|||         .||.||:|
Zfish  1217 GVIEG--------GRVGPPGVNGQKGERGTSQP-GVPGRPGEKGVRGD---------TGARGLRG 1263

  Fly  1240 FQGDQGPRGPPGIT-LPAEKGDEGVAGLDGRAGRPGHFGQKGAPGPPGENGPNGAIGHRGPQIQG 1303
            :.|:.||.|.|.:: :|...||.|:.|||   ||.|.||..|.|||||                 
Zfish  1264 YPGNPGPPGQPSLSNIPGPLGDPGLPGLD---GREGPFGPPGLPGPPG----------------- 1308

  Fly  1304 PPGP-QGDVGFPGAPGHNGRHGLIGPKGELGDMGRQGERGESGYAIVGRQGDIGDIGFQGEPGWD 1367
             ||. |||.|.||.|   ||.|:|||:||.|..|..                    |.||.||:.
Zfish  1309 -PGTVQGDRGDPGFP---GRPGIIGPRGEPGGFGAP--------------------GLQGNPGFK 1349

  Fly  1368 GAKGEQGYPGLPGKNGRVGAPGPRGPTGDAGWGGIDGMDGLVGPKGQPGVTYSYSM-AR--PGDR 1429
            |.:||.|:.|:||:      ||..|..||.|..|..|:.|..||.|.||..::.:: ||  .||.
Zfish  1350 GQRGEPGFSGVPGR------PGSPGEPGDYGRSGPRGLKGTSGPVGNPGFVFASNITARMPSGDP 1408

  Fly  1430 GEPGLDGFQGEEGDGGAPGLIGFQGQRGAVGYRGDQGEVGYTGADGPQGQRGDKGYMGLTGAPGL 1494
            |:||||||.|:.   |.|||.|..|..|..|:||..|.:|..|..|..|..||.|..|:.|..||
Zfish  1409 GQPGLDGFAGQP---GIPGLPGSPGNPGPKGFRGQVGRLGPVGLAGSPGFTGDPGPSGIQGPTGL 1470

  Fly  1495 RGLPGPQGEPA-PAPPAPKSR----GFIFARHSQSVHVPQCPANTNLLWEGYSLSGNVAASRAVG 1554
            :   ||:|:|. |..|||.:|    |:...:||||..||.||.....|||||||.......:|..
Zfish  1471 Q---GPRGKPGLPGIPAPPTRSTGIGYTLVKHSQSTRVPMCPEGMTRLWEGYSLLYVEGQEKAHN 1532

  Fly  1555 QDLGQSGSCMMRFTTMPYMLCDITNVCHFAQNNDDSLWLSTAEPMPMTMTPIQGRDLMKYISRCV 1619
            ||||..|||:..|:|:|::.|....:|::|..||.|.||||...:|  |.|:..:::..|||||.
Zfish  1533 QDLGLPGSCLPHFSTIPFLYCTANEICYYASRNDKSYWLSTTAAIP--MMPVANQEISPYISRCS 1595

  Fly  1620 VCETTTRIIALHSQSMSIPDCPGGWEEMWTGYSYFMSTLDNVGGVGQNLVSPGSCLEEFRAQPVI 1684
            |||..::.||:|||.::||.||.||..:|.|||:.|.|.....|.||:|:|||||||:|||.|.|
Zfish  1596 VCEVPSQPIAVHSQDLTIPTCPQGWRSLWIGYSFLMHTGAGGEGGGQSLMSPGSCLEDFRATPFI 1660

  Fly  1685 ECHG-HGRCNYYDALASFWLTVIEEQDQFVQ-PRQQTLKAD-FTSKISRCTVCRR 1736
            ||:| .|.|:|:....|||||.::..:|||| |.|:|||.| |.|::|||.||.:
Zfish  1661 ECNGARGTCHYFANKYSFWLTTVDVNEQFVQGPTQETLKGDQFRSRLSRCQVCMK 1715

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vkgNP_001260071.1 Collagen 60..119 CDD:189968 27/58 (47%)
Collagen 102..152 CDD:189968 27/52 (52%)
Collagen 277..334 CDD:189968 25/66 (38%)
Collagen 534..593 CDD:189968 25/58 (43%)
Collagen 814..871 CDD:189968 21/56 (38%)
Collagen 957..1014 CDD:189968 29/77 (38%)
Collagen 990..1049 CDD:189968 29/68 (43%)
Collagen 1070..1128 CDD:189968 27/64 (42%)
C4 1515..1624 CDD:128421 48/108 (44%)
C4 1625..1737 CDD:128421 61/115 (53%)
col4a6XP_017212581.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BAFZ
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D41315at33208
OrthoFinder 1 1.000 - - FOG0000443
OrthoInspector 1 1.000 - - mtm6613
orthoMCL 1 0.900 - - OOG6_100768
Panther 1 1.100 - - O PTHR24023
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.820

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