Sequence 1: | NP_001260071.1 | Gene: | vkg / 33726 | FlyBaseID: | FBgn0016075 | Length: | 1940 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_017213247.1 | Gene: | col4a2 / 553355 | ZFINID: | ZDB-GENE-070725-3 | Length: | 1670 | Species: | Danio rerio |
Alignment Length: | 1868 | Identity: | 728/1868 - (38%) |
---|---|---|---|
Similarity: | 889/1868 - (47%) | Gaps: | 343/1868 - (18%) |
- Green bases have known domain annotations that are detailed below.
Fly 6 LRHLSGLLGVVYLLGSLVSVTLAD-------------GKICNTTLCDCKGIKGRMGAPGPIGVPG 57
Fly 58 LEGPAGDIGPPGRAGPLGEKGDVGEYGEQGEKGHRGDIGPKGEMGYPGIMGKSGEPGTPGPRGID 122
Fly 123 GCDGRPGMQGPSGAPGQNGVRGPPGKPGQQGPPGEAGEGGINSKGTKGNRGETGQPGGVGPPGFD 187
Fly 188 GDRGSKGDTGYAGLTGEKGDP-----------GLPGPKGDTGAVSELPYSLIGPPGAKGEPGDSL 241
Fly 242 SGVLKPDDTLKGYKGYVGLQGDEGPQGPTGEQGAVGRNG-----LPGARGEIGGPGERGKPGK-- 299
Fly 300 ---------DGEPGRFGDKGMKGAPGW--TGAD-GLDGSPGERGEDGFTGMPGVQGGAGPPGIYD 352
Fly 353 PSLTKSLPGPIGSQGDIGPPGE-QGPP------GLPGKPGRRGPIGLAGQSGDPGLNGSRGPPGR 410
Fly 411 SERGEAGDYG-----FIGPPGPQGPPGEAGLPGRYGLHGEPGQNVVGPKGEPGLNGQPGLEGYRG 470
Fly 471 DRGEVGLPGDKGLPGEGYNIVGPPGSQGPPGFRGLPGDDGYNGLRGLPGEKGLRGD----DCPVC 531
Fly 532 NAGPRGPRGQEGDTGYPGSHGNRGAIGLTGPRGVQGLQGNPGRAGHKGLPGPAGIPGEPGKVGAA 596
Fly 597 GPDGKAIEVGSLRKGEIGDTGDSGHRGDTGDDGEKGRDGSDGSKGERGETGQRGDYGDAGYQGRD 661
Fly 662 GEPGRDGRDGAPGRNATTPKVYLIGEPGY-----DGIKGERGDDGDTGFKGVKGEPNPG------ 715
Fly 716 ---------QIYDNTGEPGEDGYTGPKGVK---GAKGEQGAIGLRGEIGDRGPAGEVIP---GPV 765
Fly 766 GAKGYPGPTGDYGQQGAPGL---PGRDGEPGLDGGIGYKGQRGVPGQEVI------QGEIGPPGR 821
Fly 822 SGIKGFPGDVGAPGQYGLAGRPGPKGVKGEQGPDGAVGQTGLPGN------KGQRGDFLVGPPGP 880
Fly 881 KGQPGRNGRQAPHGAKGQKGEVGSLGQNGQNGAKGSIGFSGRRGLLGNAGLQGLPGSPGIPGLPG 945
Fly 946 MIGEIGERGEIGYNGRQGDIGPRGPNGEFGPKGLSGDDGPDGYPGANGLPGRKGETGNPGFPG-- 1008
Fly 1009 -----RPGAKGVAAYSGIKGDD---GESGLTGP---IGYPGAPGAKGQRGPVGDSQPALDGVAGR 1062
Fly 1063 KGEVGSPGPNGLPGRHGLKGQRGDRGLPGQQGRPGEPGAKGLGGYPGRNGINGLKGATG----FP 1123
Fly 1124 GPQGPKGPQGESGVVGLDGRNGQIGDQGPRGLIGEQGEQGEQGDEGEVGIPGRLENLRDRSFYRG 1188
Fly 1189 FTGDQGLQGERGEQGDMGPIGFIGPPGAKGERGDIGYAGQLGFDGAEGLKGFQGDQGPR-----G 1248
Fly 1249 PPGITLPAEKGDEGVAGLDG-RAGRPGHFGQKGAPGPPGENGPNGAIGHRGPQIQ----GPPGPQ 1308
Fly 1309 GDVGFPGA------PGHNGRHGLIGPKGELGDMGRQGERGESGYAIVGRQGDIGDIGFQGEPGWD 1367
Fly 1368 GAKGEQGYPGLPGKNGRVGAPGPRGPTGDAGWGGIDGMDGLVGPKGQPGVTYSYSMARPGDRGEP 1432
Fly 1433 GLDGFQGEEGDGGAPGLIGFQGQRGAVGYRGDQGEVGYTGADGPQGQRGDKGYMGLTGAPGLRGL 1497
Fly 1498 PGPQGEPAPAPPAPKS--RGFIFARHSQSVHVPQCPANTNLLWEGYSLSGNVAASRAVGQDLGQS 1560
Fly 1561 GSCMMRFTTMPYMLCDITNVCHFAQNNDDSLWLSTAEPMPMTMTPIQGRDLMKYISRCVVCETTT 1625
Fly 1626 RIIALHSQSMSIPDCPGGWEEMWTGYSYFMSTLDNVGGVGQNLVSPGSCLEEFRAQPVIECHG-H 1689
Fly 1690 GRCNYYDALASFWLTVIEEQDQFVQPRQQTLKA-DFTSKISRCTVCRR 1736 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
vkg | NP_001260071.1 | Collagen | 60..119 | CDD:189968 | 20/58 (34%) |
Collagen | 102..152 | CDD:189968 | 11/49 (22%) | ||
Collagen | 277..334 | CDD:189968 | 28/75 (37%) | ||
Collagen | 534..593 | CDD:189968 | 25/58 (43%) | ||
Collagen | 814..871 | CDD:189968 | 28/62 (45%) | ||
Collagen | 957..1014 | CDD:189968 | 23/63 (37%) | ||
Collagen | 990..1049 | CDD:189968 | 28/71 (39%) | ||
Collagen | 1070..1128 | CDD:189968 | 26/61 (43%) | ||
C4 | 1515..1624 | CDD:128421 | 50/108 (46%) | ||
C4 | 1625..1737 | CDD:128421 | 58/114 (51%) | ||
col4a2 | XP_017213247.1 | Collagen | 59..118 | CDD:189968 | 31/97 (32%) |
Collagen | 113..169 | CDD:189968 | 28/66 (42%) | ||
Collagen | 495..559 | CDD:189968 | 30/68 (44%) | ||
Collagen | 879..935 | CDD:189968 | 24/58 (41%) | ||
Collagen | 996..1054 | CDD:189968 | 27/60 (45%) | ||
Collagen | 1069..1126 | CDD:189968 | 25/63 (40%) | ||
C4 | 1449..1553 | CDD:307529 | 47/105 (45%) | ||
C4 | 1559..1667 | CDD:307529 | 57/108 (53%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D41315at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000443 | |
OrthoInspector | 1 | 1.000 | - | - | mtm6613 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_100768 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
5 | 4.820 |