DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vkg and col4a2

DIOPT Version :9

Sequence 1:NP_001260071.1 Gene:vkg / 33726 FlyBaseID:FBgn0016075 Length:1940 Species:Drosophila melanogaster
Sequence 2:XP_017213247.1 Gene:col4a2 / 553355 ZFINID:ZDB-GENE-070725-3 Length:1670 Species:Danio rerio


Alignment Length:1868 Identity:728/1868 - (38%)
Similarity:889/1868 - (47%) Gaps:343/1868 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LRHLSGLLGVVYLLGSLVSVTLAD-------------GKICNTTLCDCKGIKGRMGAPGPIGVPG 57
            |:|.:.|.  .:||..:|.:...|             |:.|:.. |.|...||..|.|||:|..|
Zfish     7 LQHWNTLR--CFLLCLVVLILTTDVNAGVKKSTGPCGGRDCSGG-CQCYPEKGARGLPGPLGPQG 68

  Fly    58 LEGPAGDIGPPGRAGPLGEKGDVGEYGEQGEKGHRGDIGPKGEMGYPGIMGKSGEPGTPGPRGID 122
            ..||.|..|.||..||.|.|         ||.|..|.:||||.:|..|:                
Zfish    69 PTGPKGRQGEPGLQGPKGMK---------GEHGEAGFVGPKGSVGMEGV---------------- 108

  Fly   123 GCDGRPGMQGPSGAPGQNGVRGPPGKPGQQGPPGEAGEGGINSKGTKGNRGETGQPGGVGPPGFD 187
                          ||.||..|.||.||..|..|:||..|.|     |.||::|.      |||.
Zfish   109 --------------PGFNGADGVPGHPGPSGARGKAGPDGCN-----GTRGDSGM------PGFP 148

  Fly   188 GDRGSKGDTGYAGLTGEKGDP-----------GLPGPKGDTGAVSELPYSLIGPPGAKGEPGDSL 241
            |..|.:|..|:.|:.||||||           |.|||.|..|        ::||   .|:|    
Zfish   149 GLEGGQGTPGWPGMKGEKGDPLEVWVYMERFRGDPGPAGFPG--------IVGP---TGDP---- 198

  Fly   242 SGVLKPDDTLKGYKGYVGLQGDEGPQGPTGEQGAVGRNG-----LPGARGEIGGPGERGKPGK-- 299
                          ||.||.|.:||.||.|.:||.|:.|     |.|.:||:|..||.|.||.  
Zfish   199 --------------GYRGLPGFQGPWGPQGLKGAKGQKGERTKILKGVKGELGEIGEPGPPGVFS 249

  Fly   300 ---------DGEPGRFGDKGMKGAPGW--TGAD-GLDGSPGERGEDGFTGMPGVQGGAGPPGIYD 352
                     .||.|:.|.||.||..|:  |.|: |:.|..|.||..|..|.||.:|..|.||   
Zfish   250 QTSPIPSDWQGEKGKMGSKGDKGDLGYLSTKAESGVSGFAGARGNPGLDGWPGPRGDTGLPG--- 311

  Fly   353 PSLTKSLPGPIGSQGDIGPPGE-QGPP------GLPGKPGRRGPIGLAGQSGDPGLNGSRGPPGR 410
                  .||..|.:||:|.||| .|.|      |.||.||.|||:|..|:.|..|..|..|||  
Zfish   312 ------FPGNNGRKGDVGEPGELVGSPFDDTGVGPPGPPGERGPVGNYGRKGAKGQPGPPGPP-- 368

  Fly   411 SERGEAGDYG-----FIGPPGPQGPPGEAGLPGRYGLHGEPGQNVVGPKGEPGLNGQPGLEGYRG 470
                   .||     ..||.||:||.|.:|..      ||||.....| |.||.:|.|       
Zfish   369 -------PYGQQTVELWGPEGPRGPKGASGET------GEPGNPATQP-GPPGPDGSP------- 412

  Fly   471 DRGEVGLPGDKGLPGEGYNIVGPPGSQGPPGFRGLPGDDGYNGLRGLPGEKGLRGD----DCPVC 531
              |.||.||.||...|.:        :|.||.||.||.         .|:||.:||    :|.| 
Zfish   413 --GSVGPPGPKGSLEEYF--------KGSPGHRGRPGS---------AGKKGPKGDHGLCECSV- 457

  Fly   532 NAGPRGPRGQEGDTGYPGSHGNRGAIGLTGPRGVQGLQGNPGRAGHKGLPGPAGIPGEPGKVGAA 596
             ..|.||.|..||:|.|         |:.|..|.||.||:||..|..|||   |.||..|..|..
Zfish   458 -KPPPGPPGPPGDSGDP---------GMAGEWGQQGDQGDPGTKGANGLP---GFPGTEGLPGPK 509

  Fly   597 GPDGKAIEVGSLRKGEIGDTGDSGHRGDTGDDGEKGRDGSDGSKGERGETGQRGDYGDAGYQGRD 661
            |..|:.:|  :::||..||.||.||.|..|:.|..|.||.||..|.||..|: |..|:.|.:|..
Zfish   510 GRKGELME--AVQKGSAGDPGDPGHSGFPGEQGRPGIDGRDGEPGFRGPPGE-GPVGEPGAKGYS 571

  Fly   662 GEPGRDGRDGAPGRNATTPKVYLIGEPGY-----DGIKGERGDDGDTGFKGVKGEPNPG------ 715
            |.|||.|..|        ||    |.||.     .|:.|..||||.||..|..|.|.|.      
Zfish   572 GPPGRSGLIG--------PK----GNPGQVLGATKGLSGLPGDDGQTGPDGRTGPPGPPGDCSSR 624

  Fly   716 ---------QIYDNTGEPGEDGYTGPKGVK---GAKGEQGAIGLRGEIGDRGPAGEVIP---GPV 765
                     :...:.|.|||.|..||:|::   |..|.:|..|..|::||:|..||  |   ||.
Zfish   625 GGSQWSIPVECIGDPGPPGESGLPGPRGLEGFPGVPGPKGTAGFSGDLGDKGERGE--PGRGGPP 687

  Fly   766 GAKGYPGPTGDYGQQGAPGL---PGRDGEPGLDGGIGYKGQRGVPGQEVI------QGEIGPPGR 821
            |.||:.||.||.|..|..|:   ||..|:|||||..|.||:.|    ||.      .|:.|.||.
Zfish   688 GPKGFTGPRGDLGYPGTKGVKGPPGLSGKPGLDGASGGKGEHG----EVFGASSGAPGDPGLPGH 748

  Fly   822 SGIKGFPGDVGAPGQYGLAGRPGPKGVKGEQGPDGAVGQTGLPGN------KGQRGDFLVGPPGP 880
            .|..|..||.|.||.:|:.|.||..|:|||.||.|..|:.|.||.      .||.|  ..|||||
Zfish   749 RGDTGLTGDPGLPGYFGMEGMPGMTGLKGESGPPGLQGEQGRPGPPGTFGFPGQTG--YTGPPGP 811

  Fly   881 KGQPGRNGRQAPHGAKGQKGEVGSLGQNGQNGAKGSIGFSGRRGLLGNAGLQGLPGSPGIPGLPG 945
               ||..|...|.|.:|.:||.|.:|..|..||.|..|..|..|.:|..|.||..|.||..||||
Zfish   812 ---PGNIGEPGPSGRRGDQGEPGLIGARGVKGAIGDPGNIGVTGNIGPPGDQGETGGPGFFGLPG 873

  Fly   946 MIGEIGERGEIGYNGRQGDIGPRGPNGEFGPKGLSGDDGPDGYPGANGLPGRKGETGNPGFPG-- 1008
            :.|..|.:|..|:.|:.|:.|.:|.:|..|..||.|..|..|.||:   ||:||:.|..|.||  
Zfish   874 LKGSKGGQGMTGFPGKTGERGLKGFSGTKGEIGLPGHQGAKGAPGS---PGQKGDRGLTGPPGDK 935

  Fly  1009 -----RPGAKGVAAYSGIKGDD---GESGLTGP---IGYPGAPGAKGQRGPVGDSQPALDGVAGR 1062
                 .|..|.|  ..|.|||.   |:.|.|||   .|:||.||.:|:.|..|:.. .:.||.|.
Zfish   936 PVIHITPHMKEV--MKGSKGDHGNMGDPGFTGPRGTKGFPGIPGGEGKDGHPGEPS-VVKGVKGL 997

  Fly  1063 KGEVGSPGPNGLPGRHGLKGQRGDRGLPGQQGRPGEPGAKGLGGYPGRNGINGLKGATG----FP 1123
            .||.|..||.|:||..||.   |..|.||..|..|..|:.|..|.||.:||.|.||..|    .|
Zfish   998 PGEPGLEGPKGMPGPTGLP---GIEGFPGMSGPKGNKGSSGAYGRPGDSGIKGFKGDLGPTISLP 1059

  Fly  1124 GPQGPKGPQGESGVVGLDGRNGQIGDQGPRGLIGEQGEQGEQGDEGEVGIPGRLENLRDRSFYRG 1188
            |..|.:|..|..|..|..|..|..|::|..||.|.:|.:|.||:.|.||.||. :.|      :|
Zfish  1060 GSTGLRGETGHPGSTGAKGLYGMPGERGSSGLDGIEGMKGYQGEPGTVGPPGS-DGL------QG 1117

  Fly  1189 FTGDQGLQGERGEQGDMGPIGFIGPPGAKGERGDIGYAGQLGFDGAEGLKGFQGDQGPR-----G 1248
            |.|.||.:|..|:.|..|..|..|.||.|      |:.|..|..|.:||||.:|:||..     |
Zfish  1118 FPGSQGHKGRSGDPGQTGTTGIQGQPGQK------GFPGLKGIFGLDGLKGQKGNQGVPGTDNWG 1176

  Fly  1249 PPGITLPAEKGDEGVAGLDG-RAGRPGHFGQKGAPGPPGENGPNGAIGHRGPQIQ----GPPGPQ 1308
            .||  .|..||:.|..|:.. ..|.||..|.||..|..|..|..|..|..|||.|    ...|.|
Zfish  1177 QPG--NPGTKGELGETGIPSTTTGVPGSLGHKGTTGDSGNKGEIGQRGVPGPQGQQGFSDIKGTQ 1239

  Fly  1309 GDVGFPGA------PGHNGRHGLIGPKGELGDMGRQGERGESGYAIVGRQGDIGDIGFQGEPGWD 1367
            ||.||||.      ||..|..|:..|.|..||.|..|:.|..|..  |.|||.|:.|..||.|..
Zfish  1240 GDYGFPGIKGIPGFPGTRGTPGIPSPFGAKGDRGNVGDFGLFGEK--GVQGDRGEKGSSGESGVS 1302

  Fly  1368 GAKGEQGYPGLPGKNGRVGAPGPRGPTGDAGWGGIDGMDGLVGPKGQPGVTYSYSMARPGDRGEP 1432
            |.||::|.||:.|..||.|..|.|||.|..|..|..|..||.|.||.|.|....    ||::|.|
Zfish  1303 GRKGDKGEPGMMGFPGRRGFQGDRGPFGPKGDTGPPGFPGLPGAKGYPPVPQKL----PGEQGPP 1363

  Fly  1433 GLDGFQGEEGDGGAPGLIGFQGQRGAVGYRGDQGEVGYTGADGPQGQRGDKGYMGLTGAPGLRGL 1497
            |..|.||..|..|.||..|..|..|.||..|.:|..|..|..|..|.||:.|.||.:|..|.:|.
Zfish  1364 GQMGIQGPSGRNGNPGPAGPPGDSGFVGPSGHKGMPGLPGIPGSPGFRGEPGSMGHSGLQGEQGT 1428

  Fly  1498 PGPQGEPAPAPPAPKS--RGFIFARHSQSVHVPQCPANTNLLWEGYSLSGNVAASRAVGQDLGQS 1560
            .|..|.|.|...|.:|  .|::..:||||..:|.||...:|||.||||.......:|..||||.:
Zfish  1429 RGRPGMPGPLGMAGRSVNVGYLLVKHSQSEEIPMCPQGMSLLWMGYSLLYFEGQEKAHNQDLGLA 1493

  Fly  1561 GSCMMRFTTMPYMLCDITNVCHFAQNNDDSLWLSTAEPMPMTMTPIQGRDLMKYISRCVVCETTT 1625
            |||:.||.|||::.|:..::|::|..||.|.||||.:|:|  |.|::..::..|||||.|||..:
Zfish  1494 GSCLPRFNTMPFLYCNPGDICYYASRNDKSYWLSTTQPIP--MMPVEESEIKPYISRCSVCEAPS 1556

  Fly  1626 RIIALHSQSMSIPDCPGGWEEMWTGYSYFMSTLDNVGGVGQNLVSPGSCLEEFRAQPVIECHG-H 1689
            ..||:|||..:||:||.||..:|.|||:.|.|.....|.||:|.|||||||:||..|.|||:| .
Zfish  1557 VAIAVHSQDTTIPNCPVGWRSLWIGYSFLMHTAAGDEGGGQSLASPGSCLEDFRTTPFIECNGAK 1621

  Fly  1690 GRCNYYDALASFWLTVIEEQDQFVQPRQQTLKA-DFTSKISRCTVCRR 1736
            |.|:|:....|||||.|:|..| ..|..:|||| ...|:||||.||.:
Zfish  1622 GTCHYFANKHSFWLTSIDESFQ-SSPSSETLKAGQLLSRISRCQVCMK 1668

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vkgNP_001260071.1 Collagen 60..119 CDD:189968 20/58 (34%)
Collagen 102..152 CDD:189968 11/49 (22%)
Collagen 277..334 CDD:189968 28/75 (37%)
Collagen 534..593 CDD:189968 25/58 (43%)
Collagen 814..871 CDD:189968 28/62 (45%)
Collagen 957..1014 CDD:189968 23/63 (37%)
Collagen 990..1049 CDD:189968 28/71 (39%)
Collagen 1070..1128 CDD:189968 26/61 (43%)
C4 1515..1624 CDD:128421 50/108 (46%)
C4 1625..1737 CDD:128421 58/114 (51%)
col4a2XP_017213247.1 Collagen 59..118 CDD:189968 31/97 (32%)
Collagen 113..169 CDD:189968 28/66 (42%)
Collagen 495..559 CDD:189968 30/68 (44%)
Collagen 879..935 CDD:189968 24/58 (41%)
Collagen 996..1054 CDD:189968 27/60 (45%)
Collagen 1069..1126 CDD:189968 25/63 (40%)
C4 1449..1553 CDD:307529 47/105 (45%)
C4 1559..1667 CDD:307529 57/108 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D41315at33208
OrthoFinder 1 1.000 - - FOG0000443
OrthoInspector 1 1.000 - - mtm6613
orthoMCL 1 0.900 - - OOG6_100768
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.820

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