DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vkg and col4a3

DIOPT Version :9

Sequence 1:NP_001260071.1 Gene:vkg / 33726 FlyBaseID:FBgn0016075 Length:1940 Species:Drosophila melanogaster
Sequence 2:XP_694013.8 Gene:col4a3 / 553354 ZFINID:ZDB-GENE-070802-4 Length:1664 Species:Danio rerio


Alignment Length:1824 Identity:729/1824 - (39%)
Similarity:899/1824 - (49%) Gaps:275/1824 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LLGVVYLLGSLVSVTLADGKI-CN-TTLCDCKGIKGR------------------MGAPGPIGVP 56
            |:|:: ||| |::.|.:.|.. |: .:.|||:|:||:                  .|..||.|.|
Zfish    11 LVGMM-LLG-LLTPTQSKGACDCSGKSGCDCQGVKGQKGEKGSLGLVGDVGVQGHQGKEGPPGFP 73

  Fly    57 GLEGPAGDIGPPGRAGPLGEKGDVGEYGEQGEKGHRGDIGPKGEMGYPGIMGKSGEPGTP---GP 118
            ||:|..|..|.|||.|..|..|..|.:|..|..|..|..||:|..|.||..|..||||.|   ||
Zfish    74 GLKGYLGIPGIPGRKGSRGISGTPGFFGPPGLPGLPGIQGPRGPPGLPGCNGTKGEPGPPGLIGP 138

  Fly   119 RGIDGCDGRPGMQGPSG-------APGQNGVRGPPGKPGQQGPPGEAG-EGGINSKGTKGNRGET 175
            .|..|..||||:|||.|       |....|:.|..|:.|..||||..| :|.|..:|.|||    
Zfish   139 MGRPGIQGRPGIQGPKGETIFIAAAEQMIGLTGQQGRAGDPGPPGLPGVQGNIGPEGPKGN---- 199

  Fly   176 GQPGGVGPPGFDGDRGSKGDT----GYAGLTGEKGDPGLPGPKGDTGAVSELPYSLIGPPGAKGE 236
              ||..|.|||.|::|.:|.:    |.:|..||:|.||:||.||       :.....||...||:
Zfish   200 --PGPQGIPGFPGEKGKEGRSMGIPGPSGQKGERGPPGIPGQKG-------IKLFASGPKEPKGD 255

  Fly   237 PGDSLSGVLKPDDTLKGYKGYVGLQGDEGPQGPTGEQGAVGRNGLPGARGEIGGPGERGKPGKDG 301
            .|||..         :|..|.:||:|..||:|..||            ||:.|||   |||||:|
Zfish   256 TGDSGD---------RGSPGIIGLRGRPGPKGEKGE------------RGDPGGP---GKPGKEG 296

  Fly   302 EPGRFGDKGMKGAPGWTGADGLDGSPGERGEDGFTGMP-----------GVQGGAGPPGIYDPSL 355
            ..|..|.||.||..|:.|..|::|..|::|..|..|.|           |.:|..||||      
Zfish   297 LQGELGSKGGKGDKGYPGDTGIEGEKGQKGNPGPPGTPGEFIVINTEVKGQKGDPGPPG------ 355

  Fly   356 TKSLPGPIGSQGDIGPPGEQGPPGLP-----GKPGRRGPIGLAGQSGDPGLNGSRGPPGRSERGE 415
               |.|..||:|..|.||.||.||.|     ||||..|..||.|..|:||.: ..||.||.    
Zfish   356 ---LLGLRGSEGFYGFPGYQGLPGTPIQGPNGKPGLPGFKGLKGDKGEPGPD-ITGPKGRD---- 412

  Fly   416 AGDYGFIGPPGPQGPPGEAGLPGRYGLHGEPGQNVVGPKGEPGLNGQPGLEGYRGDRGEVGLPGD 480
                   |..|.|||||:.||||        ..||:...|..||.|..||.|..|.||:   ||:
Zfish   413 -------GQRGEQGPPGDPGLPG--------PSNVISRLGLKGLKGDKGLIGPEGLRGD---PGN 459

  Fly   481 KGLPGEGYNI----VGPPGSQGPPGFRGLPGDDGYNGLRGLPGEKGLRGDDCPVCNAGPRGPRGQ 541
            :|..|:...:    ...||..|.||..|.||..|..|::|..|.:||:|   |:   ||.||.|.
Zfish   460 QGEQGDLCRLCAASAADPGPPGQPGDSGEPGKPGAVGIQGNKGSRGLKG---PI---GPAGPPGF 518

  Fly   542 EGDTGYPGSHGNRGAIGLTGPRGVQGLQGNPGRAGHKGLPGPAGIPGEPGKVGAAGPDGKAIEVG 606
            .|.||:||..|.:|.:|:....|.:|.:|:.|..|..||.|..|:||.||..|..|..||...:.
Zfish   519 SGLTGFPGPSGPKGEMGMKYEIGEKGFKGDTGAVGLLGLSGQDGLPGIPGFKGPPGEKGKPSALA 583

  Fly   607 SLRKGEIGDTGDSGHRGDTGDDGEK-----GRDGSDGSKGERGETGQRGDYGDAGYQGR------ 660
            .  ||:.|..|..|.:|.||..|.:     |..|:.|.||..|..|::|:.||.|.:|.      
Zfish   584 P--KGDQGYPGVGGEQGSTGPMGSQGSMGVGSPGAPGEKGNLGVVGRQGNLGDPGEKGSPGPVQT 646

  Fly   661 -DGEPGRDGRDGAPGRNATTPKVYLIGEPGYDGIKGERGDDGDTGFKGVKGEPNPGQIYDNTGEP 724
             .|:||..|..|:||         |.|.||.:|..|.:|..|..|.||.||          ...|
Zfish   647 IPGDPGEPGLPGSPG---------LPGPPGNEGCAGVQGFPGLCGLKGEKG----------LSTP 692

  Fly   725 GEDGYTGPKGVKGAKGEQGAIGLRGEIGDRGPAGEVIPGPVGAKGYPGPTGDY-----GQQGAPG 784
            |:.|.|||||.||.||.||:.|. |.||.        |||.|..|.|||.|:.     |.:|..|
Zfish   693 GDTGLTGPKGDKGVKGRQGSPGC-GSIGR--------PGPPGPPGMPGPKGEIAFGCPGARGREG 748

  Fly   785 LPGRD---GEPGLDGGIGYKGQRGVPGQEVIQGEIGPPGRSGIK---GFPGDVGAPG--QYGLAG 841
            |||.:   |.||:.|..|..|.||..||:      ||||..|::   ||||..|.||  ..|..|
Zfish   749 LPGDEGCLGPPGISGPPGLSGCRGQKGQD------GPPGEFGVQGFDGFPGVAGVPGCCISGAKG 807

  Fly   842 RPGPKGVKGEQGPDGAVGQTGLPGNKGQRGDFLVGPPGPKGQPGRNGRQAPHGAKGQKGEVGSLG 906
            ..||.|::|..||.|..|..|..|..|..|..:.|..|..|.||..|   |.||.|.:|..|..|
Zfish   808 DEGPSGIRGADGPPGLPGLKGPQGETGLPGLSIPGVTGVVGIPGIFG---PVGAVGFRGPKGFQG 869

  Fly   907 QNGQNGAKGSIGFSGRRGLLGNAGLQGLPGSPGIPGLPGMIGEIGERGEIGYNGRQGDIGPRGPN 971
            ::|..|..|..|..|..|:.|..|:.|.||.||:.|..|::|..|..|:.|..|..||.|||||.
Zfish   870 RDGSPGFPGIRGDQGSPGMTGPPGVDGNPGPPGLRGPKGLMGRNGVPGDEGKPGEPGDPGPRGPK 934

  Fly   972 GEFGPKGLSGDDGPDGYPGANGLPGRKGETGNPGFPGRPGAKGVAAYSGIKGDDGESGLTGPIGY 1036
            |:.......|:.||.|.||..||||.|||.|.||..|:.|..||...||..|..|:.|:.|..|.
Zfish   935 GQSSNVTSPGELGPPGLPGLLGLPGSKGEIGLPGICGQCGKNGVPGSSGPPGPPGDPGIKGLPGN 999

  Fly  1037 PGAPGAKGQRGPVGDSQPALDGVAGRKGEVGSPGPNGLPGRHGLKGQRGDRGLPGQQ--GRPGEP 1099
            .|..|..|.:|.:|  .|.:.||.|..|..|.||..|:||.:|.||.:||...||.:  |..||.
Zfish  1000 QGLNGNFGDQGVMG--FPGVKGVKGSPGFHGEPGIPGVPGPNGPKGIKGDPSPPGPETPGLLGEK 1062

  Fly  1100 GAKGLGGYPGRNGINGLKGATGFPGPQGPKGPQGESGVVGLDGRNGQIGDQGPRGLIGEQGEQGE 1164
            |..|..|..|:.|..|:.|..|.||..|..|.:|.:||.|..|..|:.||.|..|..|..|.:|.
Zfish  1063 GEPGCAGGTGKKGDKGICGINGIPGFSGVPGERGVTGVTGDPGPPGEAGDDGFDGFPGPPGCEGP 1127

  Fly  1165 QGDEGEVGIPGRLENLRDRSFYRGFTGDQGLQGERGEQG-DMGPIGFIGPPGAKGERGD-----I 1223
            .|..|..|.|                ||.|..|.||||| |       |.||:.||:||     .
Zfish  1128 CGPPGVPGSP----------------GDPGPPGPRGEQGRD-------GIPGSAGEKGDRGCTMT 1169

  Fly  1224 GYAGQLGFDGAEGLKGFQGDQGPRGPPGITLPAEKGDEGVAGLDGRAGRPGHFGQKGAPGPPGE- 1287
            |.:|..|..|.:|:||.:|..||.||||   |.     |.:|..|..|:||..||:|..||||. 
Zfish  1170 GDSGLPGIKGEKGIKGTRGPPGPCGPPG---PC-----GPSGEIGSPGKPGEKGQRGCSGPPGVC 1226

  Fly  1288 -NGPNGAIGHRGPQ-IQGPPGPQGDVGFPGAPGHNGRHGLIGPKGELGDMGRQGERGESGYAIVG 1350
             :||.   |.|||. ..||||.||..|.||.||    .||.|.||.:|..||           ||
Zfish  1227 ISGPK---GERGPNGFPGPPGLQGPCGPPGDPG----PGLKGDKGCVGPQGR-----------VG 1273

  Fly  1351 RQGDIGDIGFQGEPGWDGAKGEQGYPGLPGKNGRVGAPGPRGPTGDAGWGGIDGMDGLVGPKGQP 1415
            ..|..||.|..||||.||..|.:|..|..|..||||..|.:|..|..|..|:.|..|..|.||..
Zfish  1274 PPGCTGDRGTPGEPGKDGDCGLRGPKGNIGPLGRVGPDGQKGQCGPVGPAGLKGCKGSPGTKGPK 1338

  Fly  1416 GVTYSYSM-ARPGDRGEPGLDGFQGEEGDGGAPGLIGF---QGQRGAVGYRGDQGEVGYTGADGP 1476
            |..|:..: :.|||||..|..|.:||.||.|..||.|.   :||:|.:|..|..|..|..|..|.
Zfish  1339 GCDYTVEIFSTPGDRGFRGKTGQKGEPGDNGDKGLRGLKGTKGQKGDIGANGPDGSKGMLGLQGD 1403

  Fly  1477 QGQRGDKGYMGLTGAPGLRGLPGPQGEPAPAPPAPKSRGFIFARHSQSVHVPQCPANTNLLWEGY 1541
            .|::|.||..||||..|.:|.||.:|     |...|..||:|.||||:..:|:|||.:..|:.||
Zfish  1404 SGEKGLKGARGLTGEVGAKGAPGAKG-----PQLRKRDGFLFTRHSQTTVIPECPAGSKRLYTGY 1463

  Fly  1542 SL---SGNVAASRAVGQDLGQSGSCMMRFTTMPYMLCDITNVCHFAQNNDDSLWLSTAEPMPMTM 1603
            ||   :||   :|..|||||..|||:..|.|||:|:|:....|.:|..||.|.||||..||....
Zfish  1464 SLLFINGN---NRGHGQDLGTLGSCLPMFNTMPFMVCNRDETCRYASRNDYSYWLSTDTPMLPDQ 1525

  Fly  1604 TPIQGRDLMKYISRCVVCETTTRIIALHSQSMSIPDCPGGWEEMWTGYSYFMSTLDNVGGVGQNL 1668
            ..:.|..|..|||||.|||....:||:|||:::||.||.||..:|.|||:.|.|.....|.||.|
Zfish  1526 QMMSGEILKWYISRCSVCEAIANVIAIHSQTINIPQCPVGWLSLWEGYSFVMQTGVGAEGSGQPL 1590

  Fly  1669 VSPGSCLEEFRAQPVIECHGHGRCNYYDALASFWLTVIEEQDQFVQPRQQTLKADFTSKISRCTV 1733
            ||||||||:||..|.|||||.|.||:|....|:||..::..:.|..|.:||.|.  ...||||.|
Zfish  1591 VSPGSCLEQFRKIPFIECHGRGTCNFYPDSYSYWLASLDHTNMFSMPNRQTAKQ--KEIISRCQV 1653

  Fly  1734 CRRR 1737
            |.::
Zfish  1654 CMKQ 1657

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vkgNP_001260071.1 Collagen 60..119 CDD:189968 27/61 (44%)
Collagen 102..152 CDD:189968 26/59 (44%)
Collagen 277..334 CDD:189968 23/56 (41%)
Collagen 534..593 CDD:189968 26/58 (45%)
Collagen 814..871 CDD:189968 25/61 (41%)
Collagen 957..1014 CDD:189968 28/56 (50%)
Collagen 990..1049 CDD:189968 26/58 (45%)
Collagen 1070..1128 CDD:189968 24/59 (41%)
C4 1515..1624 CDD:128421 54/111 (49%)
C4 1625..1737 CDD:128421 55/111 (50%)
col4a3XP_694013.8 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 136 1.000 Domainoid score I4876
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D41315at33208
OrthoFinder 1 1.000 - - FOG0000443
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100768
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.820

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