DRSC/TRiP Functional Genomics Resources

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Protein Alignment vkg and Col27a1

DIOPT Version :9

Sequence 1:NP_001260071.1 Gene:vkg / 33726 FlyBaseID:FBgn0016075 Length:1940 Species:Drosophila melanogaster
Sequence 2:XP_006538098.1 Gene:Col27a1 / 373864 MGIID:2672118 Length:1846 Species:Mus musculus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vkgNP_001260071.1 Collagen 60..119 CDD:189968
Collagen 102..152 CDD:189968
Collagen 277..334 CDD:189968
Collagen 534..593 CDD:189968
Collagen 814..871 CDD:189968
Collagen 957..1014 CDD:189968
Collagen 990..1049 CDD:189968
Collagen 1070..1128 CDD:189968
C4 1515..1624 CDD:128421
C4 1625..1737 CDD:128421
Col27a1XP_006538098.1 LamG 43..221 CDD:389952
Herpes_BLLF1 <269..567 CDD:282904
Collagen 679..737 CDD:189968
Collagen 709..768 CDD:189968
Collagen 745..801 CDD:189968
Collagen 784..842 CDD:189968
Collagen 904..975 CDD:189968
Collagen 1038..1096 CDD:189968
Collagen 1130..1184 CDD:189968
Collagen 1159..1218 CDD:189968
Collagen <1340..1382 CDD:189968
Collagen 1367..1424 CDD:189968
Collagen 1430..1489 CDD:189968
Collagen 1463..1520 CDD:189968
Collagen 1502..1561 CDD:189968
COLFI 1647..1845 CDD:382971
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 197 1.000 Domainoid score I3099
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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