Sequence 1: | NP_001260071.1 | Gene: | vkg / 33726 | FlyBaseID: | FBgn0016075 | Length: | 1940 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_038956452.1 | Gene: | Col4a6 / 363458 | RGDID: | 1589724 | Length: | 1690 | Species: | Rattus norvegicus |
Alignment Length: | 1806 | Identity: | 733/1806 - (40%) |
---|---|---|---|
Similarity: | 889/1806 - (49%) | Gaps: | 248/1806 - (13%) |
- Green bases have known domain annotations that are detailed below.
Fly 30 GKICNTTLCDCKGIKGRMGAPGPIGVPGLEGPAGDIGPPGRAGPLGEKGDVGEYGEQGEKGHRGD 94
Fly 95 IGPKGEMGYPGIMGKSGEPGTPGPRGIDGC------------DGRPGMQGPSGAPGQNGVRGPPG 147
Fly 148 K-----PGQQGPPGEAGEGGINSKGTKGNRGETGQPGGVGPPGFDGDRGSKG--------DTGYA 199
Fly 200 GLTGEKGDPGLPGPKGDTGAVSELPYSLI--GPPGAKGEPGDSLSGVLKPDDTLKGYKGYVGLQG 262
Fly 263 DEGPQ-GPTGEQGAVGRNGLPGARGEIGGPGERGKPGKDGEPGRFGDKGMKGAPGWTGADGLDGS 326
Fly 327 PGERGEDGFTGMPG--VQGGAGPPGIYDPSLTKSLPGPIGSQGDIGPPGEQGPPGLPGKPGRRGP 389
Fly 390 IGLAGQSGDPGLNGSRGPPGRSERGEAGDYGFIGPPGPQGPPGEAGLPGRYGLHG-----EPGQN 449
Fly 450 VVGPKGEPGLNGQPGLEGYRGDRGEVGLPGDKGLPGEGYNIVGPPGSQGPPGFRGLPGDDGYNGL 514
Fly 515 RGLPGEKGLRGDDCPVCNAGPRGPRGQEGDTGYPGSHGNRGAIGLTGPRGVQGLQGNPGRAGHKG 579
Fly 580 LPGPAGIP---GEPGKVGAAGPDGKAIEVGSLRKGEIGDTGDSGHRGDTGDDGEKGRDGSDGSKG 641
Fly 642 ERGETGQRGDYGDAGYQGRDGEPGRDGRDGAPGRNATTPKVYLIGEPGYDGIKGERGDDGDTGFK 706
Fly 707 GVKGEPNPGQI---YDNTGEPGEDGYTGPKGVKGAKGEQGAIGLRGEIGDRGPAGEV-IPGPVGA 767
Fly 768 KGYPGPTGDYGQQGAPGLPGRDGEPGLDGGIGYKGQRGVPG-----QEVIQGEIGPPGRSGIKGF 827
Fly 828 PGDVGAPGQYGLAGRPGPKGVKGEQGPDGAVGQTGLPGNKGQRGDFLV----GPPGPKGQPGRNG 888
Fly 889 RQAPHGAKGQKGEVGSLGQNGQNGAKGSIGFSGRRGLLGNAGLQGLPGSPGIPGLPGMIGEIGER 953
Fly 954 GEIGYNGRQGDIGPRGPNGEFGPKGLSGDDGPDGYPGANGLPGRKGETGNPG------------- 1005
Fly 1006 --FPGRPGAKGVAAYSGIKGDDGESGLTGPIGYPGAPGAKGQRGPVGDSQPALDGVAGRKGEVGS 1068
Fly 1069 PGPNGLPGRHGLKGQRGDRGLPGQQGRPGEPGAKGLGGYP---GRNGINGLKG----ATGFPGPQ 1126
Fly 1127 GPKGPQGESGVVGLDGRNGQIGDQGPRGLIGEQGEQGEQGDEGEVGIPGRLENLRDRSFYRGFTG 1191
Fly 1192 DQGLQGERGEQGDMGPIGFIGPPGAKGERGDIGYAGQLGFDGAEGLKGFQGDQGPRGPPGIT--- 1253
Fly 1254 ------LPAEKGDEGVAGL-DGRAGRPGHFGQKGAPGPPGENGPNGAIGHRG---PQ-IQGPPGP 1307
Fly 1308 QGDVGFPGAPGHNGRHGLIGPKGELGDMGRQGERGESGY-AIVGRQGDIGDIGFQGEPGWDGAKG 1371
Fly 1372 EQGYPGLPGKNGRVGAPGPRGPTGDAGWGGIDGM---DGLVGPKGQPGVTYSYSMAR---PGDRG 1430
Fly 1431 EPGLDGFQGEEGDGGAPGLIGFQGQRGAVGYRGDQGEVGYTGADGPQGQRGDKGYMGLTGAPGLR 1495
Fly 1496 GLPGPQGE-PAPAPPAPKSR-GFIFARHSQSVHVPQCPANTNLLWEGYSLSGNVAASRAVGQDLG 1558
Fly 1559 QSGSCMMRFTTMPYMLCDITNVCHFAQNNDDSLWLSTAEPMPMTMTPIQGRDLMKYISRCVVCET 1623
Fly 1624 TTRIIALHSQSMSIPDCPGGWEEMWTGYSYFMSTLDNVGGVGQNLVSPGSCLEEFRAQPVIECHG 1688
Fly 1689 -HGRCNYYDALASFWLTVIEEQDQF-VQPRQQTLK-ADFTSKISRCTVCRR 1736 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
vkg | NP_001260071.1 | Collagen | 60..119 | CDD:189968 | 27/58 (47%) |
Collagen | 102..152 | CDD:189968 | 26/66 (39%) | ||
Collagen | 277..334 | CDD:189968 | 26/56 (46%) | ||
Collagen | 534..593 | CDD:189968 | 28/61 (46%) | ||
Collagen | 814..871 | CDD:189968 | 29/56 (52%) | ||
Collagen | 957..1014 | CDD:189968 | 25/71 (35%) | ||
Collagen | 990..1049 | CDD:189968 | 28/73 (38%) | ||
Collagen | 1070..1128 | CDD:189968 | 27/64 (42%) | ||
C4 | 1515..1624 | CDD:128421 | 54/108 (50%) | ||
C4 | 1625..1737 | CDD:128421 | 57/115 (50%) | ||
Col4a6 | XP_038956452.1 | Collagen | 557..618 | CDD:396114 | 31/75 (41%) |
Collagen | 595..651 | CDD:396114 | 26/83 (31%) | ||
Collagen | 666..722 | CDD:396114 | 22/58 (38%) | ||
Collagen | 696..750 | CDD:396114 | 23/56 (41%) | ||
Collagen | 845..899 | CDD:396114 | 24/53 (45%) | ||
Collagen | 1011..1065 | CDD:396114 | 25/53 (47%) | ||
Collagen | 1403..1459 | CDD:396114 | 25/58 (43%) | ||
C4 | 1467..1571 | CDD:396133 | 51/105 (49%) | ||
C4 | 1575..1687 | CDD:396133 | 56/111 (50%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166342144 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D41315at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 1 | 1.000 | - | - | otm45195 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_100768 | |
Panther | 1 | 1.100 | - | - | O | PTHR24023 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
7 | 6.850 |