Sequence 1: | NP_001260071.1 | Gene: | vkg / 33726 | FlyBaseID: | FBgn0016075 | Length: | 1940 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001255859.1 | Gene: | col-135 / 3565413 | WormBaseID: | WBGene00000708 | Length: | 660 | Species: | Caenorhabditis elegans |
Alignment Length: | 754 | Identity: | 294/754 - (38%) |
---|---|---|---|
Similarity: | 371/754 - (49%) | Gaps: | 156/754 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 423 GPPGPQGPPGEAGLPGRYGLHGEPGQNVVGPKGEPGLNGQPGLEGYRGDRGEVGLPGDKGLPGEG 487
Fly 488 YNIVGPPGSQGPPGFRGLPGDDGYNGLRGLPGEKGLRGDDCPVCNAGPRGPRGQEGDTGYPGSHG 552
Fly 553 NRGAIGLTGPRGVQGLQGNPGRAGHKGLPGPAGIPGEPGKVGAAGPDGKAIEVGSLRKGEIGDTG 617
Fly 618 DSGHRGDTGDDGEKGRDGSDGSKGERGETGQRGDYGDAGYQGRDGEPGRDGRDGAPGRNATTPKV 682
Fly 683 YLIGEPGYDGIKGERGDDGDTGFKGVKGEPNPGQIYDNTGEPGEDGYTGPKGVKGAKGEQGAIGL 747
Fly 748 RGEIGDRGPAGEVIPGPVGAKGYPGPTGDYGQQGAPGLPGRDGEPGLDGGIGYKGQRGVPGQEVI 812
Fly 813 QGEIGPPGRSGIKGFPGDVGAPGQYGLAGRPGPKGVKGEQGPDGAVGQTGLPGNKGQRGDFLVGP 877
Fly 878 PGPKGQPGRNGRQAPHGAKGQKGEVGSLGQNGQNGAKGSIGFSGRRGLLGNAGLQGLPGSPGIPG 942
Fly 943 LPGMIGEIGERGEIGYNGRQGDIGPRGPNGEFGPKGLSGDDGPDGYPGANGLPGRKGETGNPGFP 1007
Fly 1008 GRPGAKGVAAYSGIKGDDGESGLTGPIGYPGAPGAKGQRGPVGDSQPALDGVAGRKGEVGSPGPN 1072
Fly 1073 GLPGRHGLKGQRGDRGLPGQQGRPGEPGAKGLGGYPGRNGINGLKGATGFPGPQGPKGPQGESGV 1137
Fly 1138 VGLDGRNGQIGDQGPRGLIGEQGEQGEQGDEGEVGIPGR 1176 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
vkg | NP_001260071.1 | Collagen | 60..119 | CDD:189968 | |
Collagen | 102..152 | CDD:189968 | |||
Collagen | 277..334 | CDD:189968 | |||
Collagen | 534..593 | CDD:189968 | 17/58 (29%) | ||
Collagen | 814..871 | CDD:189968 | 28/56 (50%) | ||
Collagen | 957..1014 | CDD:189968 | 24/56 (43%) | ||
Collagen | 990..1049 | CDD:189968 | 28/58 (48%) | ||
Collagen | 1070..1128 | CDD:189968 | 23/57 (40%) | ||
C4 | 1515..1624 | CDD:128421 | |||
C4 | 1625..1737 | CDD:128421 | |||
col-135 | NP_001255859.1 | Collagen | 154..211 | CDD:189968 | 28/85 (33%) |
Collagen | 205..263 | CDD:189968 | 25/69 (36%) | ||
Collagen | 238..296 | CDD:189968 | 28/84 (33%) | ||
Collagen | 313..371 | CDD:189968 | 26/66 (39%) | ||
Collagen | 364..422 | CDD:189968 | 32/62 (52%) | ||
Collagen | 397..455 | CDD:189968 | 28/77 (36%) | ||
Collagen | 436..494 | CDD:189968 | 24/69 (35%) | ||
Collagen | 511..568 | CDD:189968 | 29/76 (38%) | ||
Collagen | 579..638 | CDD:189968 | 27/58 (47%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_100768 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |