DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vkg and col-135

DIOPT Version :9

Sequence 1:NP_001260071.1 Gene:vkg / 33726 FlyBaseID:FBgn0016075 Length:1940 Species:Drosophila melanogaster
Sequence 2:NP_001255859.1 Gene:col-135 / 3565413 WormBaseID:WBGene00000708 Length:660 Species:Caenorhabditis elegans


Alignment Length:754 Identity:294/754 - (38%)
Similarity:371/754 - (49%) Gaps:156/754 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   423 GPPGPQGPPGEAGLPGRYGLHGEPGQNVVGPKGEPGLNGQPGLEGYRGDRGEVGLPGDKGLPGEG 487
            |||||.||||..                .|..|.||.||:.|..|.:||.|:.|..||.|.||.|
 Worm    61 GPPGPPGPPGTG----------------TGKDGVPGTNGKDGTPGDKGDTGDKGDKGDTGAPGVG 109

  Fly   488 YNIVGPPGSQGPPGFRGLPGDDGYNGLRGLPGEKGLRGDDCPVCNAGPRGPRGQEGDTGYPGSHG 552
              :.|.||:|||||.:|..||      :|.||.||.:|||            |::||.|..|..|
 Worm   110 --VKGDPGAQGPPGEKGKDGD------KGAPGAKGSKGDD------------GKKGDKGSSGEKG 154

  Fly   553 NRGAIGLTGPRGVQGLQGNPGRAGHKGLPGPAGIPGEPGKVGAAGPDGKAIEVGSLRKGEIGDTG 617
            .:               |:||:.|.||..|..|..|.||..|              .|||.|..|
 Worm   155 EK---------------GSPGQKGDKGEKGEKGSNGSPGSKG--------------DKGEKGADG 190

  Fly   618 DSGHRGDTGDDGEKGRDGSDGSKGERGETGQRGDYGDAGYQGRDGEPGRDGRDGAPGRNATTPKV 682
            :.|.:||.|.||.||.||:.||||::|..|.:|..|:.|.:|..|:.|..|.|||.         
 Worm   191 NPGPKGDKGADGAKGADGTPGSKGDKGSDGAKGADGNPGSKGDTGDKGEKGSDGAK--------- 246

  Fly   683 YLIGEPGYDGIKGERGDDGDTGFKGVKGEPNPGQIYDNTGEPGEDGYTGPKGVKGAKGEQGAIGL 747
               |:.|.:|..|.:||.|:.|..|.|               |.||..|.||.|||.|.:||.|.
 Worm   247 ---GDKGANGTPGSKGDKGEKGADGAK---------------GADGTPGSKGDKGADGAKGADGT 293

  Fly   748 RGEIGDRGPAGEVIPGPVGAKGYPGPTGDYGQQGAPGLPGRDGEPGLDGGIGYKGQRGVPGQEVI 812
            .|:.||:           |.||..||.||.|..|.||..|..|:.|.||.   ||..|.||.:  
 Worm   294 PGQKGDK-----------GEKGLDGPKGDKGADGTPGAKGDKGDKGADGA---KGADGTPGSK-- 342

  Fly   813 QGEIGPPGRSGIKGFPGDVGAPGQYGLAGRPGPKGVKGEQGPDGAVGQTGLPGNKGQRGDFLVGP 877
                |..|..|:.|..||.||.|..|..|.||.||.|||:|.|||.|..|.||.||.:|:  .|.
 Worm   343 ----GDKGEKGLDGPKGDKGADGAKGANGTPGAKGDKGEKGTDGAKGADGTPGAKGDKGE--KGL 401

  Fly   878 PGPKGQPGRNGRQAPHGAKGQKGEVGSLGQNGQNGAKGSIGFSGRRGLLGNAGLQGLPGSPGIPG 942
            .||||..|.:|..   ||||.|||      .|.:||||:.|..|.:|..|..|.:|..|:|    
 Worm   402 DGPKGDKGADGTP---GAKGDKGE------KGADGAKGADGTPGSKGDKGADGAKGADGTP---- 453

  Fly   943 LPGMIGEIGERGEIGYNGRQGDIGPRGPNGEFGPKGLSGDDGPDGYPGANGLPGRKGETGNPGFP 1007
                 |:.|::||.|.:|.:||   :|.:|..|.||..|:.|.||..||:|.||.||:.|:.|..
 Worm   454 -----GQKGDKGEKGLDGPKGD---KGADGTPGAKGDKGEKGADGAKGADGTPGSKGDKGDKGLD 510

  Fly  1008 GRPGAKGVAAYSGIKGDDGESGLTGPIGYPGAPGAKGQRGPVGDSQPALDGVAGRKGEVGSPGPN 1072
            |..|.||.....|.|||.||.   |.||.||..|.||::|.        ||..|:||:.|.||. 
 Worm   511 GPKGDKGADGTPGSKGDKGEK---GDIGQPGQKGDKGEKGQ--------DGQPGQKGQDGQPGQ- 563

  Fly  1073 GLPGRHGLKGQRGDRGLPGQQGRPGEPGAKGLGGYPGRNGINGLKGATGFPGPQGPKGPQGESGV 1137
                    ||.:||:| .|::|:.|:||.||..|.||:.|..|.||..|.||.:|.||.:|:.|.
 Worm   564 --------KGDKGDKG-QGEKGQDGQPGQKGQDGQPGQKGDKGEKGDIGQPGQKGDKGDKGQDGQ 619

  Fly  1138 VGLDGRNGQIGDQGPRGLIGEQGEQGEQGDEGEVGIPGR 1176
            .|..|::||.|.:|..|..|::|::||:|::||.|..|:
 Worm   620 PGQKGQDGQPGQKGQDGQPGQKGDKGEKGEKGEKGEKGQ 658

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vkgNP_001260071.1 Collagen 60..119 CDD:189968
Collagen 102..152 CDD:189968
Collagen 277..334 CDD:189968
Collagen 534..593 CDD:189968 17/58 (29%)
Collagen 814..871 CDD:189968 28/56 (50%)
Collagen 957..1014 CDD:189968 24/56 (43%)
Collagen 990..1049 CDD:189968 28/58 (48%)
Collagen 1070..1128 CDD:189968 23/57 (40%)
C4 1515..1624 CDD:128421
C4 1625..1737 CDD:128421
col-135NP_001255859.1 Collagen 154..211 CDD:189968 28/85 (33%)
Collagen 205..263 CDD:189968 25/69 (36%)
Collagen 238..296 CDD:189968 28/84 (33%)
Collagen 313..371 CDD:189968 26/66 (39%)
Collagen 364..422 CDD:189968 32/62 (52%)
Collagen 397..455 CDD:189968 28/77 (36%)
Collagen 436..494 CDD:189968 24/69 (35%)
Collagen 511..568 CDD:189968 29/76 (38%)
Collagen 579..638 CDD:189968 27/58 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100768
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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