DRSC/TRiP Functional Genomics Resources

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Protein Alignment vkg and Col4a1

DIOPT Version :9

Sequence 1:NP_001260071.1 Gene:vkg / 33726 FlyBaseID:FBgn0016075 Length:1940 Species:Drosophila melanogaster
Sequence 2:NP_723044.1 Gene:Col4a1 / 33727 FlyBaseID:FBgn0000299 Length:1779 Species:Drosophila melanogaster


Alignment Length:1789 Identity:781/1789 - (43%)
Similarity:971/1789 - (54%) Gaps:182/1789 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 CKGIKGRMGAPGPIGVPGLEGPAGDIGPPGRAGPLGEKGDVGEYGEQGEKGHRGDIGPKGEMGYP 104
            |...||..|.|||:|..||:|..|..|..|.:|..|:|||.|.||::|:||.||..|..|:.|.|
  Fly    84 CIAEKGNRGLPGPLGPTGLKGEMGFPGMEGPSGDKGQKGDPGPYGQRGDKGERGSPGLHGQAGVP 148

  Fly   105 GIMGKSGEPGTPGPRGIDGCDGR---PGMQGPSGAPGQNGVRGPPGKPGQQGPPGEAGEGGINSK 166
            |:.|.:|.||.||..|.|||||:   ||::|.||.||..|..|..|..|::|.|  |.|.|..:|
  Fly   149 GVQGPAGNPGAPGINGKDGCDGQDGIPGLEGLSGMPGPRGYAGQLGSKGEKGEP--AKENGDYAK 211

  Fly   167 GTKGNRGETGQPGGVGPPGFDGDRGSKGDTGYAGLTGEKGDPGLPGPKGDTGAVSELPYSLIGP- 230
            |.||..|..|..|..||.||.|::|.:||:|..|..|.:|:.||.|.||         .|..|| 
  Fly   212 GEKGEPGWRGTAGLAGPQGFPGEKGERGDSGPYGAKGPRGEHGLKGEKG---------ASCYGPM 267

  Fly   231 ----PGAKGEPGDSLSGV-LKPDDTL---------KGYKGYVGLQGDEGPQGPTGEQGAVGRNGL 281
                ||.|||.|:..|.. :||..|:         ||..|.||.:|:.||:|.||..|..|..||
  Fly   268 KPGAPGIKGEKGEPASSFPVKPTHTVMGPRGDMGQKGEPGLVGRKGEPGPEGDTGLDGQKGEKGL 332

  Fly   282 PGARGEIGGPGERGKPGKDGEPGRFGDKGMKGAPGWTGADGLDGSPGERGEDGFTGMPGVQGGAG 346
            |      ||||:||:.|..|.||..|.||.:|.||..|..|..|..||.|..|.||.||:.|..|
  Fly   333 P------GGPGDRGRQGNFGPPGSTGQKGDRGEPGLNGLPGNPGQKGEPGRAGATGKPGLLGPPG 391

  Fly   347 PPGIYDPSLTKSLPGPIGSQGDIGPPGEQGPPGLPGKPGRRGPIGLAGQSGDPGLNGSRGPPG-R 410
            |||  ....|...|||.|.:|.:|.||.||..|:.|.||.:|..|..|.:|.||..|:.|||| :
  Fly   392 PPG--GGRGTPGPPGPKGPRGYVGAPGPQGLNGVDGLPGPQGYNGQKGGAGLPGRPGNEGPPGKK 454

  Fly   411 SERGEA---------GDYGFIGPPGPQGPPGEAGLPGRYGLHGEPGQNVVGPKGEPGLNGQPGLE 466
            .|:|.|         |..|..|||||:|..|:||||| ||:.|.        ||:.|:.|.|||:
  Fly   455 GEKGTAGLNGPKGSIGPIGHPGPPGPEGQKGDAGLPG-YGIQGS--------KGDAGIPGYPGLK 510

  Fly   467 GYRGDRGEVGLPGDKGLPGEGYNIVGPPGSQGPPGFRGLPGDDGYNGLRGLPGEKGLRGD---DC 528
            |.:|:|   |..|:.|.||:  :.:|.||:.|..|..|..||.|..|..|..|:.|::||   .|
  Fly   511 GSKGER---GFKGNAGAPGD--SKLGRPGTPGAAGAPGQKGDAGRPGTPGQKGDMGIKGDVGGKC 570

  Fly   529 PVCNAGPRGPRGQEGDTGYPGSHGNRGAIGLTGPRGVQGLQGNPGRAGHKGLPGPAGIPGEPGKV 593
            ..|.|||:|.:|..|..|.||.         .|.||..|.:|.||..||.|:.|..|.|||.|:.
  Fly   571 SSCRAGPKGDKGTSGLPGIPGK---------DGARGPPGERGYPGERGHDGINGQTGPPGEKGED 626

  Fly   594 GAAGPDGKAIEVG-------SLRKGEIGDTGDSGHRGDTGDDGEKGRDGSDGSKGERGETGQRGD 651
            |..|..|...|.|       ||.:...||.|..|..|..|..|.||.:|..|..|.:||.|.:|:
  Fly   627 GRTGLPGATGEPGKPALCDLSLIEPLKGDKGYPGAPGAKGVQGFKGAEGLPGIPGPKGEFGFKGE 691

  Fly   652 YGDAGYQGRDGEPGRDGRDGAPGRNATTPKVYLIGEPGYDGIKGERGDDGDTGFKGVKGEPNPGQ 716
            .|.:|..|.||.|||.||||.||    .|...:.||||:.|..|.:||.|..|..|.||||....
  Fly   692 KGLSGAPGNDGTPGRAGRDGYPG----IPGQSIKGEPGFHGRDGAKGDKGSFGRSGEKGEPGSCA 752

  Fly   717 IYD-------NTGEPGEDGYTGPKGVKGAKGEQGAIGLRGEIGDRGPAGEVIPGPVGAKGYPGPT 774
            :.:       |.||||:.|..||.|..|:.||:|..||:|..|.:||     ||..|.:|..||.
  Fly   753 LDEIKMPAKGNKGEPGQTGMPGPPGEDGSPGERGYTGLKGNTGPQGP-----PGVEGPRGLNGPR 812

  Fly   775 GDYGQQGA---PGLPGRDGEPGLDGGIGYKGQRGVPGQEVIQGEIGPPGRSGIKGFPGDVGAPGQ 836
            |:.|.|||   ||.||:||..|:.|..|..|.||.||.. ..|.:||||.:|::|..||.|..|.
  Fly   813 GEKGNQGAVGVPGNPGKDGLRGIPGRNGQPGPRGEPGIS-RPGPMGPPGLNGLQGEKGDRGPTGP 876

  Fly   837 YGLAGRPGPKGVKGEQGPDGAVGQTGLPGNKGQRGDFLVGPPGP---KGQPGRNGRQAPHGAKGQ 898
            .|..|..|..|..|::|..|..|.:|.||..|::||  |||.||   .|.||..|.....|..|.
  Fly   877 IGFPGADGSVGYPGDRGDAGLPGVSGRPGIVGEKGD--VGPIGPAGVAGPPGVPGIDGVRGRDGA 939

  Fly   899 KGEVGSLGQNGQNGAKGSIGFSGRRGLLGNAGLQGLPGSPGIPGLPGMIGEIGERGEIGYNGRQG 963
            |||.||.|..|..|.||..|..|..|..|.||:.|.||..|..|:||:.|..|::|..|..|..|
  Fly   940 KGEPGSPGLVGMPGNKGDRGAPGNDGPKGFAGVTGAPGKRGPAGIPGVSGAKGDKGATGLTGNDG 1004

  Fly   964 DIGPRGPNGEFGPKGLSGDDGPDGYPGANGLPGRKGETGNPGFP---GRPGAKGVAAYSGIKGDD 1025
            .:|.|||.|..|..|:.||.|..|.||..||.|..||.||.|||   |.||..|.|:..|.||:.
  Fly  1005 PVGGRGPPGAPGLMGIKGDQGLAGAPGQQGLDGMPGEKGNQGFPGLDGPPGLPGDASEKGQKGEP 1069

  Fly  1026 GESGL---TGPIGYPGAPGAKGQRGPVGDSQPALDGVAGRKGEVGSPGPNGLPGRHGLKGQRGDR 1087
            |.|||   |||.|.||.||.||..|      .|:.|.||..||.|..|.:|:.||.|:.|::|::
  Fly  1070 GPSGLRGDTGPAGTPGWPGEKGLPG------LAVHGRAGPPGEKGDQGRSGIDGRDGINGEKGEQ 1128

  Fly  1088 GLPGQQGRPGEPGAKGLGGYPGRNGINGLKGATGFPGP---QGPKGPQGESGVVGLDGRNGQIGD 1149
            ||.|..|:|||.|:.|..|.||..|::||.||.|.||.   .|.:|.:||.|:.||.|..|:.|.
  Fly  1129 GLQGVWGQPGEKGSVGAPGIPGAPGMDGLPGAAGAPGAVGYPGDRGDKGEPGLSGLPGLKGETGP 1193

  Fly  1150 QGPRGLIGEQGEQGEQGDEGEVGIPGRLENLRDRSFYRGFTGDQGLQGER---GEQGDMGPIGFI 1211
            .|.:|..|..|.:||:|..|:.|:|..:.::|         ||:|.||||   ||:|:.|..|..
  Fly  1194 VGLQGFTGAPGPKGERGIRGQPGLPATVPDIR---------GDKGSQGERGYTGEKGEQGERGLT 1249

  Fly  1212 GPPGAKGERGDIGYAGQLGFDGAEGLKGFQGDQGPRGP---PGITLPAEKGDEGVAGLDGR---A 1270
            ||.|..|.:||.|..|..|..|..|:.|.:||.||||.   ||:|:..|||..|..|.:||   .
  Fly  1250 GPAGVAGAKGDRGLQGPPGASGLNGIPGAKGDIGPRGEIGYPGVTIKGEKGLPGRPGRNGRQGLI 1314

  Fly  1271 GRPGHFGQKGAPG----P-----PGENGPNGAIGHRGPQIQGPPGPQGDVGFPGAPGHNGRHGLI 1326
            |.||..|::|.||    |     ||..||.|:.|.||  :.|.||..|..||||||         
  Fly  1315 GAPGLIGERGLPGLAGEPGLVGLPGPIGPAGSKGERG--LAGSPGQPGQDGFPGAP--------- 1368

  Fly  1327 GPKGELGDMGRQGERGESGYAIVGRQGDIGDIGFQGE---PGWDGAKGEQGYPGLPGKNGRVGAP 1388
            |.||:.|..|.:||||.:|:.  |::||.||.|.||.   ||..|.||:.|||||.|.:|.||||
  Fly  1369 GLKGDTGPQGFKGERGLNGFE--GQKGDKGDRGLQGPSGLPGLVGQKGDTGYPGLNGNDGPVGAP 1431

  Fly  1389 GPRGPTGDAGWGGIDGMDGLVGPKGQPGVTYSYSMARPGDRGEPGLDGFQGEEGDGGAP---GLI 1450
            |.||.||..|..|.||..||.|.||:||:     :..||.:||||..|..|.:|:.|.|   |||
  Fly  1432 GERGFTGPKGRDGRDGTPGLPGQKGEPGM-----LPPPGPKGEPGQPGRNGPKGEPGRPGERGLI 1491

  Fly  1451 GFQGQRGAVGYRGDQGEVGYTGADGPQGQRGDKGYMGLTGAPGLRGLPGPQGEPAPAPPAPKSRG 1515
            |.||:||..|.||..||.|..|..||:|.||:.|..|..||.||.|..|..|.|||| ......|
  Fly  1492 GIQGERGEKGERGLIGETGNVGRPGPKGDRGEPGERGYEGAIGLIGQKGEPGAPAPA-ALDYLTG 1555

  Fly  1516 FIFARHSQSVHVPQCPANTNLLWEGYSL---SGNVAASRAVGQDLGQSGSCMMRFTTMPYMLCDI 1577
            .:..|||||..||.|.|....||.||||   .||   ..|..||||..|||:.||:|:|.:.|..
  Fly  1556 ILITRHSQSETVPACSAGHTELWTGYSLLYVDGN---DYAHNQDLGSPGSCVPRFSTLPVLSCGQ 1617

  Fly  1578 TNVCHFAQNNDDSLWLSTAEPMPMTMTPIQGRDLMKYISRCVVCETTTRIIALHSQSMSIPDCPG 1642
            .|||::|..||.:.||:|...:|  |.|::..::.:|||||||||....:||:|||::.:||||.
  Fly  1618 NNVCNYASRNDKTFWLTTNAAIP--MMPVENIEIRQYISRCVVCEAPANVIAVHSQTIEVPDCPN 1680

  Fly  1643 GWEEMWTGYSYFMSTLDNVGGVGQNLVSPGSCLEEFRAQPVIECHG-HGRCNYYDALASFWLTVI 1706
            |||.:|.|||:.|.|....||.||.|.|||||||:|||.|.|||:| .|.|::|:.:.|||:..:
  Fly  1681 GWEGLWIGYSFLMHTAVGNGGGGQALQSPGSCLEDFRATPFIECNGAKGTCHFYETMTSFWMYNL 1745

  Fly  1707 EEQDQFVQPRQQTLKA-DFTSKISRCTVCRRRGN 1739
            |....|.:|:|||:|| :..|.:|||.||.:..:
  Fly  1746 ESSQPFERPQQQTIKAGERQSHVSRCQVCMKNSS 1779

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vkgNP_001260071.1 Collagen 60..119 CDD:189968 28/58 (48%)
Collagen 102..152 CDD:189968 26/52 (50%)
Collagen 277..334 CDD:189968 26/56 (46%)
Collagen 534..593 CDD:189968 24/58 (41%)
Collagen 814..871 CDD:189968 23/56 (41%)
Collagen 957..1014 CDD:189968 29/59 (49%)
Collagen 990..1049 CDD:189968 34/64 (53%)
Collagen 1070..1128 CDD:189968 27/60 (45%)
C4 1515..1624 CDD:128421 52/111 (47%)
C4 1625..1737 CDD:128421 58/113 (51%)
Col4a1NP_723044.1 Collagen 104..161 CDD:189968 26/56 (46%)
Collagen 322..380 CDD:189968 28/63 (44%)
Collagen 413..465 CDD:189968 23/51 (45%)
Collagen 499..561 CDD:189968 26/66 (39%)
Collagen 574..632 CDD:189968 27/66 (41%)
Collagen 657..714 CDD:189968 26/56 (46%)
Collagen 765..824 CDD:189968 29/63 (46%)
Collagen 854..911 CDD:189968 23/56 (41%)
Collagen 884..943 CDD:189968 25/60 (42%)
Collagen 923..982 CDD:189968 26/58 (45%)
Collagen 1028..1085 CDD:189968 29/56 (52%)
Collagen 1229..1287 CDD:189968 27/57 (47%)
Collagen 1318..1376 CDD:189968 27/68 (40%)
Collagen 1399..1458 CDD:189968 33/58 (57%)
Collagen 1477..1534 CDD:189968 28/56 (50%)
C4 1555..1662 CDD:128421 52/111 (47%)
C4 1663..1777 CDD:128421 58/113 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45461339
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BAFZ
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D18124at33392
OrthoFinder 1 1.000 - - FOG0000443
OrthoInspector 1 1.000 - - mtm6613
orthoMCL 1 0.900 - - OOG6_100768
Panther 1 1.100 - - P PTHR24023
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
87.750

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