DRSC/TRiP Functional Genomics Resources

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Protein Alignment vkg and col1a1b

DIOPT Version :9

Sequence 1:NP_001260071.1 Gene:vkg / 33726 FlyBaseID:FBgn0016075 Length:1940 Species:Drosophila melanogaster
Sequence 2:NP_958886.1 Gene:col1a1b / 325675 ZFINID:ZDB-GENE-030131-4400 Length:1449 Species:Danio rerio


Alignment Length:1690 Identity:594/1690 - (35%)
Similarity:687/1690 - (40%) Gaps:465/1690 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 LADGKICNTTLC--------------DCKGIKGRMGAPGPIGVPGLEGPAGDIGPPGRAGPLGEK 77
            :.||:.|  .:|              |..|..|..|.|||:|.||.:|..|:.|.||..||.|..
Zfish    79 IPDGECC--PICPDEEVTAAPEPPYVDTVGPAGPRGDPGPVGPPGRDGTPGENGLPGPPGPPGTS 141

  Fly    78 G-DVGEYGEQGEKGHRGDIGPKGEMGYPGIMGKSGEPGTPGPRGIDGCDGRPGMQGPSGAPGQNG 141
            | ..|.:..|...|.....||. :.|.||.||..|.||..|..|..|..|.||..|..||||..|
Zfish   142 GLGGGSFLSQMAYGSEKSSGPP-QPGPPGPMGPRGLPGPAGSPGPQGFTGPPGEPGEPGAPGPMG 205

  Fly   142 VRGPPGKPGQQGPPGEAGEGGINSKGTKGNRGETGQPGGVGPPGFDGDRGSKGDTGYAGLTGEKG 206
            .|||||.||:.|..||||:.     |..|.||..|..|..|.||..|..|.||..|:.||.|.||
Zfish   206 SRGPPGPPGKNGEDGEAGKA-----GRPGERGAAGPQGARGFPGTPGLPGIKGHRGFPGLDGAKG 265

  Fly   207 DPGLPGPKGDTGAVSELPYSLIGPPGAKGEPGDSLSGVLKPDDTLKGYKGYVGLQGDEGPQGPTG 271
            |.|:.||||:.|:           ||..|.|                                  
Zfish   266 DAGIAGPKGEAGS-----------PGEAGTP---------------------------------- 285

  Fly   272 EQGAVGRNGLPGARGEIGGPGERGKPGKDGEPGRFGDKGMKGAPGWTGADGLDGSPGERGEDGFT 336
              ||:|..||||.||..|.||..|..|.|      |:.|..|.||.||..|..|.||..|..|.|
Zfish   286 --GAMGARGLPGERGRPGPPGPSGARGND------GNTGAAGPPGPTGPAGPPGFPGGAGAKGET 342

  Fly   337 GMPGVQGGAGPPGIYDPSLTKSLPGPIGSQGDIGPPGEQGP---PGLPGKPGRRGPIGLAGQSGD 398
            |..|.:|..||            .||.|..|:.||.|..||   ||..|.||.:|..|.||.:|.
Zfish   343 GAAGGRGSEGP------------QGPRGEPGNPGPAGAAGPAGGPGSDGTPGGKGSPGAAGIAGA 395

  Fly   399 PGLNGSRGPPGRSERGEAGDYGFIGPPGPQGPPGEAGLPGRYGLHGEPGQNVVGPKGEPGLNGQP 463
            ||..|:||||              ||.||.|.||..|..|..||.|..|.  .|||||||..|..
Zfish   396 PGFPGARGPP--------------GPAGPNGAPGPKGNNGDPGLQGPKGD--AGPKGEPGPVGPQ 444

  Fly   464 GLEGYRGDRGEVGLPGDKGLPGEGYNIVGPPGSQGPPGFRGLPGDDGYNGLRGLPGEKGLRGDDC 528
            ||.|..|:.|:.|..|:.|..|.    |||||::|.||.|||||.||..|..|.|||:|..|   
Zfish   445 GLAGNAGEEGKRGARGEPGAAGP----VGPPGARGAPGNRGLPGSDGAPGPLGAPGERGANG--- 502

  Fly   529 PVCNAGPRGPRGQEGDTGYPGSHGNRGAIGLTGPRGVQGLQGNPGRAGHKGLPGPAGIPGEPGKV 593
            |:...|..|..|:.|:.|.|||.|..||.|..||.|..|..|.||:.|..|.|||||..|.||.:
Zfish   503 PMGAQGASGESGRPGEPGLPGSKGMTGAPGSPGPDGKAGPSGAPGQDGRPGPPGPAGSRGAPGVM 567

  Fly   594 GAAGPDGKAIEVGSLRKGEIGDTGDSGHRGDTGDDGEKGRDGSDGSKGERGETGQRGDYGDAGYQ 658
            |..||                                ||.||..|..||||..|..|..      
Zfish   568 GFPGP--------------------------------KGTDGESGKPGERGLAGPTGPL------ 594

  Fly   659 GRDGEPGRDGRDGAPGRNATTPKVYLIGEPGYDGIKGERGDDGDTGFKGVKGEPNPGQIYDNTGE 723
               |.||:||..|:|            |.||..|..||:|:.|..|..|.:|.|         |.
Zfish   595 ---GAPGKDGDIGSP------------GAPGPAGPAGEKGEQGSAGPSGFQGLP---------GA 635

  Fly   724 PGEDGYTGPKGVKGAKGEQGAIGLRGEIGDRGPAGEVIPGPVGAKGYPGPTGDYGQQGAPGLPGR 788
            .|..|.||..|.:|..||.|..|..|..||||..||        :|.|||.|..|.:||||.||.
Zfish   636 QGATGETGKPGEQGLPGEAGPSGPSGPRGDRGFPGE--------RGAPGPGGPTGPRGAPGSPGN 692

  Fly   789 DGEPGLDGGIGYKGQRGVPGQEVIQGEIGPPGRSGIKGFPGDVGAPGQYGLAGRPGPKGVKGEQG 853
            |            |.:|.||.....|.:||   :|::|.||:.||.   |:.|..|.:|..|.:|
Zfish   693 D------------GAKGEPGAAGANGGVGP---AGMQGMPGERGAG---GMPGARGDRGDGGPKG 739

  Fly   854 PDGAVGQTGLPGNKGQRGDFLVGPPGPKGQPGRNGRQAPHGAKGQKGEVGSLGQNGQNGAKGSIG 918
            ||||.|:.|:.|..|.     :|||||.|.|            |.|||                 
Zfish   740 PDGAPGKDGVRGMTGP-----IGPPGPSGAP------------GDKGE----------------- 770

  Fly   919 FSGRRGLLGNAGLQGLPGSPGIPGLPGMIGEIGERGEIGYNGRQGDIGPRGPNGEFGPKGLSGDD 983
                            ||:.|.|||.|..|..|||||:|..|..|..||.|.||:.|.||.:||.
Zfish   771 ----------------PGAVGPPGLTGPRGGPGERGEVGAPGPAGFAGPPGGNGQPGAKGETGDS 819

  Fly   984 GPDGYPGANGLPGRKGETGNPGFPGRPGAKGVAAYSGIKGDDGESGLTGPIGYPGAPGAKGQRGP 1048
            ||            ||:.|.||..|..||.|....:|..|..|..|..||.|..|.|||.|:.||
Zfish   820 GP------------KGDAGAPGPAGPVGASGPQGPAGATGPKGARGGAGPPGATGFPGAAGRVGP 872

  Fly  1049 VGDSQPALDGVAGRKGEVGSPGPNGLPGRHGLKGQRGDRGLPGQQGRPGEPGAKGLGGYPGRNGI 1113
            .|.|           |..|.|||.|..|:   :||||.||..|..|||||.||            
Zfish   873 PGPS-----------GASGPPGPTGPAGK---EGQRGARGEKGPAGRPGEAGA------------ 911

  Fly  1114 NGLKGATGFPGPQGPKGPQGESGVVGLDGRNGQIGDQGPRGLIGEQGEQGEQGDEGEVGIPGRLE 1178
                        .||.||.||.|..|.||..|..|..||.|:||.:|..|..|..||        
Zfish   912 ------------AGPPGPSGERGSPGPDGPLGLAGAPGPPGVIGSRGIVGLPGQRGE-------- 956

  Fly  1179 NLRDRSFYRGFTGDQGLQGERGEQGDMGPIGFIGPPGAKGERGDIGYAGQLGFDGAEGLKGFQGD 1243
                    |||.|..|..||.|:||..||:|..||||..|..|..|..|:.|.:|..|..|..|.
Zfish   957 --------RGFGGLAGPSGEPGKQGPSGPVGERGPPGPMGPPGLSGAPGEAGREGNPGHDGVSGR 1013

  Fly  1244 QGPRGPPGITLPAEKGDEGVAGLDGRAGRPGHFGQKGAPGPPGENGPNGAIGHRGPQIQGPPGPQ 1308
            .||.||        |||.|.:|..|..|.|      ||||.||..||:|..|.||.  .||.||.
Zfish  1014 DGPPGP--------KGDRGESGNSGPPGAP------GAPGAPGPIGPSGKTGDRGE--AGPAGPA 1062

  Fly  1309 GDVGFPGAPGHNGRHGLIGPKGELGDMGRQGERGESGYAIVGRQGDIGDIGFQGEPGWDGAKGEQ 1373
            |    |..|.  |..|.:||.|..||.|..||.||.     |.:|..|..|..|.||..|..|||
Zfish  1063 G----PSGPA--GARGALGPAGPRGDRGEAGEAGER-----GMKGHRGLSGMPGVPGPPGTSGEQ 1116

  Fly  1374 GYPGLPGKNGRVGAPGPRGPTGDAGWGGIDGMDGLVGPKGQPGVTYSYSMARPGDRGEPGLDGFQ 1438
            |    |.  |..|..|||||.|..|..|.|||:|:.||.|.           ||.||.      .
Zfish  1117 G----PA--GATGPAGPRGPAGSNGSPGKDGMNGVPGPVGP-----------PGPRGR------S 1158

  Fly  1439 GEEGDGGAPGLIGFQGQRGAVGYRGDQGEVGYTGADGPQGQRGDKGYMGLTGAPGLRGLPGPQGE 1503
            ||.|..|||||                     .|..||.|..|          ||...||.||.|
Zfish  1159 GEMGPAGAPGL---------------------PGPPGPPGSAG----------PGEPFLPMPQQE 1192

  Fly  1504 PAPAPPAPKSRGFIFARHSQSVHVPQCPANTNLLWEGYSLSGNVAASRAVGQDLGQSGSCMMRFT 1568
            ..|.|    .||. :.....||.......:|:|    .|||..:...|:      ..|:     .
Zfish  1193 KGPDP----LRGG-YRADDASVRDRDSEVDTSL----KSLSQKIENIRS------PEGT-----Q 1237

  Fly  1569 TMPYMLCDITNVCHFAQNNDDSLWLSTAEPMPMTMTPIQGRDLMKYISRCVVC--ET-TTRIIAL 1630
            ..|..:|....:|| .:....|.|:...:..|:        |.:|     |.|  || .|.:...
Zfish  1238 ANPARMCRDLRMCH-PEWKSGSYWVDPNQGSPL--------DAIK-----VFCNMETGETCVSPY 1288

  Fly  1631 HSQ--------SMSIPDCPGGW--EEMWTGYSY-----------------FMSTLDNVGGVGQNL 1668
            ||.        |.:|.:....|  |.|..|:.:                 ||..:.|.|  .||:
Zfish  1289 HSDIPRKNWYTSKNIREKKHVWFGESMPNGFQFQYGSDGSDPEDVNIQLTFMRLMSNQG--SQNI 1351

  Fly  1669  1668
            Zfish  1352  1351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vkgNP_001260071.1 Collagen 60..119 CDD:189968 23/59 (39%)
Collagen 102..152 CDD:189968 27/49 (55%)
Collagen 277..334 CDD:189968 25/56 (45%)
Collagen 534..593 CDD:189968 29/58 (50%)
Collagen 814..871 CDD:189968 23/56 (41%)
Collagen 957..1014 CDD:189968 23/56 (41%)
Collagen 990..1049 CDD:189968 22/58 (38%)
Collagen 1070..1128 CDD:189968 18/57 (32%)
C4 1515..1624 CDD:128421 23/111 (21%)
C4 1625..1737 CDD:128421 15/71 (21%)
col1a1bNP_958886.1 VWC 33..88 CDD:214564 3/10 (30%)
Collagen 223..282 CDD:189968 29/74 (39%)
Collagen 433..491 CDD:189968 32/61 (52%)
Collagen 463..522 CDD:189968 30/65 (46%)
Collagen 511..582 CDD:189968 36/102 (35%)
Collagen 617..667 CDD:189968 21/58 (36%)
Collagen 898..957 CDD:189968 31/98 (32%)
Collagen 1066..1137 CDD:189968 35/83 (42%)
COLFI 1215..1448 CDD:279718 35/168 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BAFZ
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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