Sequence 1: | NP_001260071.1 | Gene: | vkg / 33726 | FlyBaseID: | FBgn0016075 | Length: | 1940 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_445756.1 | Gene: | Col1a1 / 29393 | RGDID: | 61817 | Length: | 1453 | Species: | Rattus norvegicus |
Alignment Length: | 1497 | Identity: | 574/1497 - (38%) |
---|---|---|---|
Similarity: | 664/1497 - (44%) | Gaps: | 286/1497 - (19%) |
- Green bases have known domain annotations that are detailed below.
Fly 27 LADGKICNTTLCDCKGIKGRMGAPGPI----------GVPGLEGPAGDIGPPGRAGPLGEKGDVG 81
Fly 82 EYGEQGEKGHRGDIGPKGEMGYPGIMGKSGEPGTPGPRGIDGCDGR------------------P 128
Fly 129 GMQGPSGAPGQNGVRGPPGKPGQQGPPGEAGEGGINSKGTKGNRGETGQPGGVGPPGFDGDRGSK 193
Fly 194 GDTGYAGLTGEKGDPGLPGPKGDTGAVSELPYSLIGPPGAKGEPGDSLSGVLKPDDTLKGYKGYV 258
Fly 259 GL---QGDEGPQGPTGEQGAVGRNGLPGARGEIGGPGERGKPGKDGEPGRFGDKGMKGAPGWTGA 320
Fly 321 DGLDGSPGERGEDGFTGMPGVQGGAGPPGIYDPSLTKSLPGPIGSQGDIGPPGEQGPPGLPGKPG 385
Fly 386 RRGPIGLAGQSGDPGLNGSRGPPGRSERGEAGDYGFIGPPGPQGPPGEAGLPGRYGLHGEPG--- 447
Fly 448 -QNVVGPKGEP---GLNGQPGLEGYRGDRGEVGLPGDKGLPGEGYNIVGPPGSQGPPGFRGLPGD 508
Fly 509 DGYNGLRGLPGEKGLRGDDCPVCNAGPRGPRGQEGDTGYPGSHGNRGAIGLTGPRGVQGLQGN-- 571
Fly 572 -PGRAGHKGLPGPAGIP---GEPGKVGAAGPDGKAIEVGSLRKGEIGDTGDSGHRGDTGDDGEKG 632
Fly 633 RDGSDGSKGERGETGQRGDYGDAGYQGRDGEPGRDGRDGAPGRNATTPKVYLIGEPGYDGIKGER 697
Fly 698 GDDGDTGFKGVKGEPNPGQIYDNTGEPGEDGYTGPKGVKGAKGEQGAIGLRGEIGDRGPAGEVIP 762
Fly 763 GPVGAKGYPGPTGDYGQQGAPGLPGRDGEPGLDGGIGYKGQRGVPGQEVIQGEIGPPGRSGIKGF 827
Fly 828 PGDVGAPGQYGLAGRPGPKGVKGEQGPDGAVGQTGLPGNKGQRGDFLVGPPGPKGQPGRNGRQAP 892
Fly 893 HGAKGQKGEVGSLGQNGQNGAKGSIGFSGRRGLLGNAGLQGLPGSPGIPGLPGMIGEIGERGEIG 957
Fly 958 YNGRQGDIGPRGPNGEFGPKGLSGDDGPDGYPGANGLPGRKGETGNPGFPGRPGAKGVAAYSGIK 1022
Fly 1023 GDDGESGLTGPIGYPGAPGAKGQRGPVGDSQPALDGVAGRKGEVGSPGPNGLPGRHGLKGQRGDR 1087
Fly 1088 GLPGQQGRPGEPGAKGLGGYPGRNGINGLKGATGFPGPQGPKGPQGESGVVGLDGRNGQIGDQGP 1152
Fly 1153 RGLIGEQGEQGEQGDEGEVGIPGRLENLRDRSFYRGFTGDQGLQGERGEQGDMGPIGFIGPPGAK 1217
Fly 1218 GERGDIGYAGQLGFDGAEGLKGFQGDQGPRGPPGITLPAEKGDEGVAGLDGRAGRPGHFGQKGAP 1282
Fly 1283 GPPGENGPNGAIGHRGPQIQGPPGPQGDVGFPGAPGHNGRHG---LIGPKGELGDMGRQGERGES 1344
Fly 1345 GYAIVGRQGDIGDIGFQGEPGWDGAKGEQGYPGLPG-------------KNGRVGAPGPRGPTGD 1396
Fly 1397 A--GWGGIDGMDGLVGPKGQPGVTYS--YSMARPGDR-----GEPGLDGFQGEEG-DGGAPGLIG 1451
Fly 1452 FQ 1453 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
vkg | NP_001260071.1 | Collagen | 60..119 | CDD:189968 | 21/58 (36%) |
Collagen | 102..152 | CDD:189968 | 25/67 (37%) | ||
Collagen | 277..334 | CDD:189968 | 25/56 (45%) | ||
Collagen | 534..593 | CDD:189968 | 32/64 (50%) | ||
Collagen | 814..871 | CDD:189968 | 25/56 (45%) | ||
Collagen | 957..1014 | CDD:189968 | 27/56 (48%) | ||
Collagen | 990..1049 | CDD:189968 | 22/58 (38%) | ||
Collagen | 1070..1128 | CDD:189968 | 29/57 (51%) | ||
C4 | 1515..1624 | CDD:128421 | |||
C4 | 1625..1737 | CDD:128421 | |||
Col1a1 | NP_445756.1 | VWC | 31..86 | CDD:214564 | 9/26 (35%) |
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 97..1206 | 538/1322 (41%) | |||
Nonhelical region (N-terminal) | 152..167 | 0/14 (0%) | |||
Triple-helical region | 168..1181 | 503/1203 (42%) | |||
Collagen | 225..284 | CDD:189968 | 29/81 (36%) | ||
Collagen | 264..316 | CDD:189968 | 26/51 (51%) | ||
Collagen | 390..449 | CDD:189968 | 28/63 (44%) | ||
Collagen | 486..545 | CDD:189968 | 27/67 (40%) | ||
Collagen | 525..584 | CDD:189968 | 29/60 (48%) | ||
Collagen | 657..714 | CDD:189968 | 28/59 (47%) | ||
Collagen | 696..748 | CDD:189968 | 28/59 (47%) | ||
Cell attachment site. /evidence=ECO:0000255 | 734..736 | 0/7 (0%) | |||
Collagen | 1068..1123 | CDD:189968 | 30/79 (38%) | ||
Cell attachment site. /evidence=ECO:0000255 | 1082..1084 | 1/4 (25%) | |||
Major antigenic determinant (of neutral salt-extracted rat skin collagen) | 1176..1186 | 5/11 (45%) | |||
Nonhelical region (C-terminal) | 1182..1207 | 5/24 (21%) | |||
COLFI | 1219..1452 | CDD:279718 | 25/123 (20%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E33208_3BAFZ | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.900 |