DRSC/TRiP Functional Genomics Resources

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Protein Alignment vkg and COL19A1

DIOPT Version :9

Sequence 1:NP_001260071.1 Gene:vkg / 33726 FlyBaseID:FBgn0016075 Length:1940 Species:Drosophila melanogaster
Sequence 2:XP_011533739.1 Gene:COL19A1 / 1310 HGNCID:2196 Length:1167 Species:Homo sapiens


Alignment Length:1115 Identity:390/1115 - (34%)
Similarity:483/1115 - (43%) Gaps:297/1115 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 CDCKGIKGRMGAPGPIGVPGLEGPAGDIGPPGRAGPLGEKGDVGEYGEQGEKGHRGDIGPKGEMG 102
            |.|...||..|.||..|.||.:|..|:   ||..|..|..|..|:.||||.:|.:|:.|.|||  
Human   310 CQCIPNKGEAGLPGAPGSPGQKGHKGE---PGENGLHGAPGFPGQKGEQGFEGSKGETGEKGE-- 369

  Fly   103 YPGIMGKSGEPGTPGPRGIDGCDGRPGMQGPSGAPGQNGVRGPPGKPGQQGPPGEAGEGGINSKG 167
                   .||.|.|...|::|.:|..|..||.|.||..|.:|..|.|   |||...|..||.   
Human   370 -------QGEKGDPALAGLNGENGLKGDLGPHGPPGPKGEKGDTGPP---GPPALPGSLGIQ--- 421

  Fly   168 TKGNRGETGQPGGVGPPGFDGDRGSKGDTGYAGLTGEKGDPGLPGPKGDTGAVSELPYSLIGPPG 232
                       |..||||.:|.||.:|.|         |.||.|||.|..           ||||
Human   422 -----------GPQGPPGKEGQRGRRGKT---------GPPGKPGPPGPP-----------GPPG 455

  Fly   233 AKGEPGDSLSGVLKPDDTLKGYKGYVGLQGDEGPQGPTGEQGAVGRNGLPGARGEIGGPGERGKP 297
            .:|           ...||.||........||...|  |.:|..|..||||..|.:|..|::|:|
Human   456 IQG-----------IHQTLGGYYNKDNKGNDEHEAG--GLKGDKGETGLPGFPGSVGPKGQKGEP 507

  Fly   298 GKDGEPGRFGDKGMKGAPGWTGADGLDGSPGERGEDGFTGMPGVQGGAGPPGIYDPSLTKSLPGP 362
               |||...|:||.:|.||..|:.|:.|.||:.|..|..|.||::|..|..|..         ||
Human   508 ---GEPFTKGEKGDRGEPGVIGSQGVKGEPGDPGPPGLIGSPGLKGQQGSAGSM---------GP 560

  Fly   363 IGSQGDIGPPGEQGPPGLPGKPGRRGPIGLAGQSGDPGLNGSRGPPGRSERGEAGDYGFIGPPGP 427
            .|..||:|.|||.   |:|||.      |:.|:.||||                   |.|||||.
Human   561 RGPPGDVGLPGEH---GIPGKQ------GIKGEKGDPG-------------------GIIGPPGL 597

  Fly   428 QGPPGEAGLPGRYGLHGEPGQNVVGPKGEPGLNGQPGLEGYRGDRGEVGLPGDKGLPGEGYNIVG 492
            .||.||||.||:            ...|||||:|.||..|.||.:||.||||..|.||:    :|
Human   598 PGPKGEAGPPGK------------SLPGEPGLDGNPGAPGPRGPKGERGLPGVHGSPGD----IG 646

  Fly   493 PPGSQGPPGFRGLPGDDGYNGLRGLPGEKGLRGDDCPVCNAGPRGPRGQEGDTGYPGSHGNRGAI 557
            |.|.                   |:||..|.:|   |....|.:||||..|..|.||:.||.|. 
Human   647 PQGI-------------------GIPGRTGAQG---PAGEPGIQGPRGLPGLPGTPGTPGNDGV- 688

  Fly   558 GLTGPRGVQGLQGNPGRAGHKGLPGPAGIPGEPGKVGAAGPDGKAIEVGSLRKGEIGDTGDSGHR 622
                          |||.|..|||||   ||:|..:...|      ::|:|.|...|:.      
Human   689 --------------PGRDGKPGLPGP---PGDPIALPLLG------DIGALLKNFCGNC------ 724

  Fly   623 GDTGDDGEKGRDGSDGSKGERGETGQRGDYGDAGYQGRDGEPGRDGRDGAPGRNATTPKVYLIGE 687
             .....|.|...|.:|..||.|:.......||.|.:|..|.|||:|..|:.            ||
Human   725 -QASVPGLKSNKGEEGGAGEPGKYDSMARKGDIGPRGPPGIPGREGPKGSK------------GE 776

  Fly   688 PGYDGIKGERGDDGDTGFKGVKGEPNPGQIYDNTGEPGEDGYTGPKGVKGAKGEQGAIGLRGEIG 752
            .||.||.||:||:|..|..|:.|.|.|               |||                    
Human   777 RGYPGIPGEKGDEGLQGIPGIPGAPGP---------------TGP-------------------- 806

  Fly   753 DRGPAGEVIPGPVGAKGYPGPTGDYGQQGAPGLPGRDGEPGLDGGIGYKGQRGVPGQEVIQGEI- 816
                     ||.:|..|:|||||..|::|:.|.||:.|.|| ..||.:..:.|:.....|:|.: 
Human   807 ---------PGLMGRTGHPGPTGAKGEKGSDGPPGKPGPPG-PPGIPFNERNGMSSLYKIKGGVN 861

  Fly   817 -----GPPGRSGIKGFPGDVGAPGQYGLAGRPGPKGVKGEQGPDGAVGQTGLPGNKGQRGDFLVG 876
                 ||||..|.||.||.||.||..||.|..|..||||::||.|..|..|:.|..|     ..|
Human   862 VPSYPGPPGPPGPKGDPGPVGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGMSGKPG-----APG 921

  Fly   877 PPGPKGQPGRNGRQAPHGAKGQKGEVGSLGQNGQNGAKGSIGFSGRRGLLGNAGLQGLPGSPGIP 941
            |||..|:|            |::|.||.:|..|..|..|..|.:|:         .|:||:.||.
Human   922 PPGVPGEP------------GERGPVGDIGFPGPEGPSGKPGINGK---------DGIPGAQGIM 965

  Fly   942 GLPGMIGEIGERGEIGYNGRQGDIGPRGPNGEFGPKGLSGDDGPDGYPGANGLPGRKGETGNPGF 1006
            |.||..|..||||:.|..|.:|..|.||..|..|.||..|..||.|..|:.|.||.:|..|:||.
Human   966 GKPGDRGPKGERGDQGIPGDRGSQGERGKPGLTGMKGAIGPMGPPGNKGSMGSPGHQGPPGSPGI 1030

  Fly  1007 PGRPGAKGVAAYSGIKG----------DDGESGLTGPIGYPG---APGAKGQRGPVGDSQPALDG 1058
            ||.|.  ...::..||.          ::..:.....:..|.   |..|.|:.||     |..||
Human  1031 PGIPA--DAVSFEEIKKYINQEVLRIFEERMAVFLSQLKLPAAMLAAQAYGRPGP-----PGKDG 1088

  Fly  1059 VAGRKGEVGSPGPNGLPGRHGLKGQRGDRGLPGQQGRPGEPGAKGLGGYPGRNGINGLKGATGFP 1123
            :         |||.|.||..|.:||:|:||.|| .|.||.|      |.||.:.: ||.|:.|.|
Human  1089 L---------PGPPGDPGPQGYRGQKGERGEPG-IGLPGSP------GLPGTSAL-GLPGSPGAP 1136

  Fly  1124 GPQGPKGPQG 1133
            |||||.||.|
Human  1137 GPQGPPGPSG 1146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vkgNP_001260071.1 Collagen 60..119 CDD:189968 22/58 (38%)
Collagen 102..152 CDD:189968 17/49 (35%)
Collagen 277..334 CDD:189968 25/56 (45%)
Collagen 534..593 CDD:189968 24/58 (41%)
Collagen 814..871 CDD:189968 29/62 (47%)
Collagen 957..1014 CDD:189968 25/56 (45%)
Collagen 990..1049 CDD:189968 18/71 (25%)
Collagen 1070..1128 CDD:189968 28/57 (49%)
C4 1515..1624 CDD:128421
C4 1625..1737 CDD:128421
COL19A1XP_011533739.1 TSPN 75..258 CDD:214560
Glutenin_hmw 299..>691 CDD:281191 189/535 (35%)
Collagen 317..369 CDD:189968 23/54 (43%)
Collagen 499..572 CDD:189968 33/84 (39%)
Collagen 622..684 CDD:189968 31/87 (36%)
Collagen 932..981 CDD:189968 22/57 (39%)
Collagen 966..1020 CDD:189968 24/53 (45%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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