Sequence 1: | NP_001260071.1 | Gene: | vkg / 33726 | FlyBaseID: | FBgn0016075 | Length: | 1940 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_031764.2 | Gene: | Col7a1 / 12836 | MGIID: | 88462 | Length: | 2944 | Species: | Mus musculus |
Alignment Length: | 1671 | Identity: | 671/1671 - (40%) |
---|---|---|---|
Similarity: | 803/1671 - (48%) | Gaps: | 285/1671 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 42 GIKGRMGAPGP------------IGVPGLEGPAGDIGPPGRAGPLGEKGDVGEYGEQGEKGHRGD 94
Fly 95 IGPKGEMGYPGIMGKSGEPGTPGPRGIDGCDGRPGMQGPSGAPGQNGVRGPPGKPGQQGPPGEAG 159
Fly 160 EGGINSKGTKGNRGETGQPG-GVGP--------PGFDGDRGSKGDTGYAGLTGEKGD-----PGL 210
Fly 211 PGPKGDTGAVSELPYSLIGPPGAKGEPGDSLSGVLKPDDTLKGYKGYVGLQGDEGPQGPTGEQGA 275
Fly 276 VGRNGLPGARGEIGGPGERGKPGKDGEPGRFGD----------KGMKGAPGWTGADGLDGSPGER 330
Fly 331 GEDGFTGMPGVQGGAGPPGIYDPSLTKSLPGPIGSQGDIGPPGEQGPPGLPGKPGRRGPIGLAGQ 395
Fly 396 SGDPGLNGSRGPPGRSERGEAGDYGFIGPPGPQGPPGEAGLPGRYGLHGEPGQNVVGPKGEPGLN 460
Fly 461 GQPGLEGYRGDRGEVGLPG-------------DKGLPGEGYNIVGPPGSQGPPGFRGLPGDDGYN 512
Fly 513 GLRGLPGEKGLRGDDCPVCNAGPRGPRGQEGDTGYPGSHGNR---GAIGLTGPRGVQGLQGNPGR 574
Fly 575 AGHKGLP------GPAGIPGEPGKVGAAGPDGKAIEVGSLRKGEIGDTGDSGHRGDTGDDGEKGR 633
Fly 634 DGSDGSKGERGETGQRGDYGDAGYQGRDGEPGRDGRDGAPGRNATTPKVYLIGEPGYDGIKGERG 698
Fly 699 DDGDTGFKGVKGE-PNPGQIYDNT-----------------------------GEPGEDGYTGPK 733
Fly 734 GVKGAKGEQGAIGLRGEIGDRGPAGEVIPG-PVGAKGYPGPTGDYGQQGAPGLPGRDGEPGLDGG 797
Fly 798 IGYKGQRGVPGQEVIQGEIGPPGRSGIKGFPGDVGAPGQYGLAGRPGPKGVKGEQGPDGAVGQTG 862
Fly 863 LPGNKGQRGDFLVGPPGPKGQPGRNGRQAPHGAKGQKGEVGSLGQNGQNGAKGSIGFSGRRGLLG 927
Fly 928 NAGLQGLPGSPGIPGLPGMIGEIGERGEIGYNGRQGDIGP--RGPNGEFGPKGLSGDDGPDGY-- 988
Fly 989 -PGANGLPGRKGETGNPGFPGRPGAK---------GVAAYSGIKGDDGESGLTGPIGYP-----G 1038
Fly 1039 APGAKGQRGPVGDSQPALDGVAGRKGEVGSPGPNGLPGRHGLKGQRGDRGLPGQQGRP------G 1097
Fly 1098 EPGAKGLGGYPGRNGINGLK------------GATGFPGPQGPK------GPQGESGVVGLDGRN 1144
Fly 1145 ---GQIGDQGPRGLIGEQGEQGEQGDEGE--VGIPGRLENLRDRSFYRGFTGDQGLQGERGEQGD 1204
Fly 1205 MGPIGFIGPPGAKGERGDIGYAGQLGFDGAEGLKGFQGD----QGPRGPPGITLP-AEKGDEGVA 1264
Fly 1265 GLDGRAGRPGHFGQKGAPGPPGENGPNGAIGHRGPQIQGP---PGPQGDVGFPGAPGHNGRHGLI 1326
Fly 1327 GPKGELGDMGRQGERGESGYAIV----GRQGDIGDIGFQGEPGWDGAKGEQGYPGLPGKNGRVGA 1387
Fly 1388 PGPRGPTGDAGWGGIDGMDGLVGPKGQPGVTYSYSMARPGDRGEPGLDGFQGEEGDGGAPGLIGF 1452
Fly 1453 QGQRGAVGYRGDQGEVGYTGADGPQGQRGDKGYMGLTGAPGLRGLPGPQGEPAPA-PPAPKSRGF 1516
Fly 1517 I-------FARHSQSVHVPQCPANTNLLWEGYSLSGNVAASRAVGQ 1555 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
vkg | NP_001260071.1 | Collagen | 60..119 | CDD:189968 | 30/58 (52%) |
Collagen | 102..152 | CDD:189968 | 24/49 (49%) | ||
Collagen | 277..334 | CDD:189968 | 29/66 (44%) | ||
Collagen | 534..593 | CDD:189968 | 30/67 (45%) | ||
Collagen | 814..871 | CDD:189968 | 26/56 (46%) | ||
Collagen | 957..1014 | CDD:189968 | 30/70 (43%) | ||
Collagen | 990..1049 | CDD:189968 | 32/72 (44%) | ||
Collagen | 1070..1128 | CDD:189968 | 29/75 (39%) | ||
C4 | 1515..1624 | CDD:128421 | 10/48 (21%) | ||
C4 | 1625..1737 | CDD:128421 | |||
Col7a1 | NP_031764.2 | Nonhelical region (NC1). /evidence=ECO:0000255 | 18..1254 | ||
vWA_collagen_alphaI-XII-like | 38..202 | CDD:238759 | |||
fn3 | 234..318 | CDD:278470 | |||
FN3 | 334..414 | CDD:238020 | |||
fn3 | 427..488 | CDD:278470 | |||
fn3 | 510..588 | CDD:278470 | |||
FN3 | 599..681 | CDD:238020 | |||
fn3 | 688..765 | CDD:278470 | |||
fn3 | 778..856 | CDD:278470 | |||
fn3 | 874..946 | CDD:278470 | |||
FN3 | 959..1046 | CDD:238020 | |||
VWA | 1055..1223 | CDD:278519 | |||
Cell attachment site. /evidence=ECO:0000255 | 1171..1173 | ||||
Triple-helical region. /evidence=ECO:0000255 | 1255..2775 | 661/1623 (41%) | |||
Interrupted collagenous region. /evidence=ECO:0000255 | 1255..1475 | 96/226 (42%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1259..1934 | 308/728 (42%) | |||
Collagen | 1398..1444 | CDD:189968 | 18/45 (40%) | ||
Collagen | 1470..1511 | CDD:189968 | 17/43 (40%) | ||
Collagen | 1560..1624 | CDD:189968 | 32/67 (48%) | ||
Collagen | 1601..1660 | CDD:189968 | 30/60 (50%) | ||
Collagen | 1643..1695 | CDD:189968 | 29/67 (43%) | ||
Collagen | 1839..1893 | CDD:189968 | 25/53 (47%) | ||
Collagen | 1875..1931 | CDD:189968 | 25/62 (40%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1960..2773 | 351/866 (41%) | |||
Cell attachment site. /evidence=ECO:0000255 | 2002..2004 | 0/1 (0%) | |||
Cell attachment site. /evidence=ECO:0000255 | 2063..2065 | 0/1 (0%) | |||
Collagen | 2099..2158 | CDD:189968 | 24/66 (36%) | ||
Collagen | 2233..2292 | CDD:189968 | 25/58 (43%) | ||
Collagen | 2275..2338 | CDD:189968 | 29/62 (47%) | ||
Collagen | 2448..2497 | CDD:189968 | 23/58 (40%) | ||
Collagen | 2481..2559 | CDD:189968 | 36/83 (43%) | ||
Collagen | 2530..2589 | CDD:189968 | 25/60 (42%) | ||
Collagen | 2575..2632 | CDD:189968 | 24/56 (43%) | ||
Cell attachment site. /evidence=ECO:0000255 | 2601..2603 | 0/1 (0%) | |||
Collagen | 2605..2664 | CDD:189968 | 27/58 (47%) | ||
Cell attachment site. /evidence=ECO:0000255 | 2631..2633 | 0/1 (0%) | |||
Collagen | 2641..2693 | CDD:189968 | 27/65 (42%) | ||
Nonhelical region (NC2). /evidence=ECO:0000255 | 2776..2944 | 10/46 (22%) | |||
KU | 2877..2932 | CDD:238057 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E33208_3BAFZ | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |