DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vkg and Col7a1

DIOPT Version :9

Sequence 1:NP_001260071.1 Gene:vkg / 33726 FlyBaseID:FBgn0016075 Length:1940 Species:Drosophila melanogaster
Sequence 2:NP_031764.2 Gene:Col7a1 / 12836 MGIID:88462 Length:2944 Species:Mus musculus


Alignment Length:1671 Identity:671/1671 - (40%)
Similarity:803/1671 - (48%) Gaps:285/1671 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 GIKGRMGAPGP------------IGVPGLEGPAGDIGPPGRAGPLGEKGDVGEYGEQGEKGHRGD 94
            |:.||.|||||            .|.||.|||.|..|.||..|..|.||..|..|.:||:|.||.
Mouse  1276 GLPGRTGAPGPQGPPGSTQAKGERGFPGPEGPPGSPGLPGVPGSPGIKGSTGRPGPRGEQGERGP 1340

  Fly    95 IGPKGEMGYPGIMGKSGEPGTPGPRGIDGCDGRPGMQGPSGAPGQNGVRGPPGKPGQQGPPGEAG 159
            .|||||.|.||.:...|.||.||.:|..|..|.||.:||.|.||.   |||||.|          
Mouse  1341 QGPKGEPGEPGQITGGGGPGFPGKKGDPGPSGPPGSRGPVGDPGP---RGPPGLP---------- 1392

  Fly   160 EGGINSKGTKGNRGETGQPG-GVGP--------PGFDGDRGSKGDTGYAGLTGEKGD-----PGL 210
              ||:.||.||:|||.|.|| |:|.        ||..|..|.:|..|..|..|||||     |||
Mouse  1393 --GISVKGDKGDRGERGPPGPGIGASEQGDPGLPGLPGSPGPQGPAGRPGEKGEKGDCEDGGPGL 1455

  Fly   211 PGPKGDTGAVSELPYSLIGPPGAKGEPGDSLSGVLKPDDTLKGYKGYVGLQGDEGPQGPTGEQGA 275
            ||..|..           |.||.:|.||  ::|. |.|..|.|..|..|::|:.|..||.|.||.
Mouse  1456 PGQPGPP-----------GEPGLRGAPG--MTGP-KGDRGLTGTPGEPGVKGERGHPGPVGPQGL 1506

  Fly   276 VGRNGLPGARGEIGGPGERGKPGKDGEPGRFGD----------KGMKGAPGWTGADGLDGSPGER 330
            .|..|.||..|..|.||..|:.|:.|||||.||          ||.||..|..|..|..||.||:
Mouse  1507 PGAAGHPGVEGPEGPPGPTGRRGEKGEPGRPGDPAVGPGGAGAKGEKGEAGLPGPRGASGSKGEQ 1571

  Fly   331 GEDGFTGMPGVQGGAGPPGIYDPSLTKSLPGPIGSQGDIGPPGEQGPPGLPGKPGRRGPIGLAGQ 395
            |..|. .:||..|..|.||...|.   .|.|..|..||.|||||:|.||.||.||..||.|..|:
Mouse  1572 GAPGL-ALPGDPGPKGDPGDRGPI---GLTGRAGPTGDSGPPGEKGEPGRPGSPGPVGPRGRDGE 1632

  Fly   396 SGDPGLNGSRGPPGRSERGEAGDYGFIGPPGPQGPPGEAGLPGRYGLHGEPGQNVVGPKGEPGLN 460
            :|:.|..|..|.||..  |:||:.|..|.|||:||.||.      |..|:|        ||.|.|
Mouse  1633 AGEKGDEGIPGEPGLP--GKAGERGLRGAPGPRGPVGEK------GDQGDP--------GEDGRN 1681

  Fly   461 GQPGLEGYRGDRGEVGLPG-------------DKGLPGEGYNIVGPPGSQGPPGFRGLPGDDGYN 512
            |.||..|.:|||||.|.||             |||.||:    .||.|.:|.||..|:.|:.|.:
Mouse  1682 GSPGSSGPKGDRGEPGPPGPPGRLVDAGIESRDKGEPGQ----EGPRGPKGDPGPPGVSGERGID 1742

  Fly   513 GLRGLPGEKGLRGDDCPVCNAGPRGPRGQEGDTGYPGSHGNR---GAIGLTGPRGVQGLQGNPGR 574
            ||||.||.:|         :.|.|||.|.:||.|.||..|..   |..|..||.|:.|..|..|.
Mouse  1743 GLRGPPGPQG---------DPGVRGPAGDKGDRGPPGLDGRSGLDGKPGAPGPPGLHGASGKAGD 1798

  Fly   575 AGHKGLP------GPAGIPGEPGKVGAAGPDGKAIEVGSLRKGEIGDTGDSGHRGDTGDDGEKGR 633
            .|..|||      ||.|.||.||..|.||.|||....|  :.|:.||.|:.|.:|:.||.|..||
Mouse  1799 PGRDGLPGLRGEHGPPGPPGPPGVPGKAGDDGKPGLNG--KNGDPGDPGEDGRKGEKGDSGAPGR 1861

  Fly   634 DGSDGSKGERGETGQRGDYGDAGYQGRDGEPGRDGRDGAPGRNATTPKVYLIGEPGYDGIKGERG 698
            :|.||.|||||..|..|..|..|..|:.|.||: |..|.||  .|.||    |:.|..|.|||:|
Mouse  1862 EGPDGPKGERGAPGNPGLQGPPGLPGQVGPPGQ-GFPGVPG--ITGPK----GDRGETGSKGEQG 1919

  Fly   699 DDGDTGFKGVKGE-PNPGQIYDNT-----------------------------GEPGEDGYTGPK 733
            ..|:.|.:|..|. ||..::.:..                             |..|:.|..||.
Mouse  1920 LPGERGLRGEPGSLPNAERLLETAGIKVSALREIVDTWDESSGSFLPVPERRPGPKGDPGDRGPP 1984

  Fly   734 GVKGAKGEQGAIGLRGEIGDRGPAGEVIPG-PVGAKGYPGPTGDYGQQGAPGLPGRDGEPGLDGG 797
            |.:|..|..|..||:||.||.||.|.  || .:|.:|.|||.|..|:.|.||:||..|..|..|.
Mouse  1985 GKEGLIGFPGERGLKGERGDPGPQGP--PGLALGERGPPGPPGLAGEPGKPGIPGLPGRAGGSGE 2047

  Fly   798 IGYKGQRGVPGQEVIQGEIGPPGRSGIKGFPGDVGAPGQYGLAGRPGPKGVKGEQGPDGAVGQTG 862
            .|..|:||..|:   :||.|..||.|:.|.||..|.||.......||| |:..||||.|..|..|
Mouse  2048 AGRPGERGERGE---KGERGDQGRDGLPGLPGPPGPPGPKVAIEEPGP-GLAREQGPPGLKGAKG 2108

  Fly   863 LPGNKGQRGDFLVGPPGPKGQPGRNGRQAPHGAKGQKGEVGSLGQNGQNGAKGSIGFSGRRGLLG 927
            .||:.|.        |||||..|..|.:...|..|::|..|:.|..|:.|..|..|..|.:|..|
Mouse  2109 EPGSDGD--------PGPKGDRGVPGIKGDVGEPGKRGHDGNPGLPGERGVAGPEGKPGLQGPRG 2165

  Fly   928 NAGLQGLPGSPGIPGLPGMIGEIGERGEIGYNGRQGDIGP--RGPNGEFGPKGLSGDDGPDGY-- 988
            ..|..|..|.||.||.||:.|..|.:|..|..|..|:.||  ||..|..|..||.|..||.|.  
Mouse  2166 TPGPVGSHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLPGPVGAVGLPGPPGPSGLVG 2230

  Fly   989 -PGANGLPGRKGETGNPGFPGRPGAK---------GVAAYSGIKGDDGESGLTGPIGYP-----G 1038
             .|:.||||:.||||.||.|||.|:.         ||....|:.|..|..|..||:|.|     |
Mouse  2231 PQGSPGLPGQVGETGKPGPPGRDGSSGKDGDRGSPGVPGSPGLPGPVGPKGEPGPVGAPGQVVVG 2295

  Fly  1039 APGAKGQRGPVGDSQPALDGVAGRKGEVGSPGPNGLPGRHGLKGQRGDRGLPGQQGRP------G 1097
            .|||||::|..||...||.|..|.||:.|.|||.|..|..|..|..||.|..||:|.|      |
Mouse  2296 PPGAKGEKGAPGDLAGALLGEPGAKGDRGLPGPRGEKGEAGRAGGPGDPGEDGQKGAPGLKGLKG 2360

  Fly  1098 EPGAKGLGGYPGRNGINGLK------------GATGFPGPQGPK------GPQGESGVVGLDGRN 1144
            |||. |:.|.||.:|..|:|            |..||||..||:      ||.||.|:.|..||.
Mouse  2361 EPGI-GVQGPPGPSGPPGMKGDLGPPGAPGAPGVVGFPGQTGPRGETGQPGPVGERGLAGPPGRE 2424

  Fly  1145 ---GQIGDQGPRGLIGEQGEQGEQGDEGE--VGIPGRLENLRDRSFYRGFTGDQGLQGERGEQGD 1204
               |.:|..||.|..|..|..|.:||:|:  .|:||.          ||..|:.|::||.|..|.
Mouse  2425 GAPGPLGPPGPPGSAGAPGASGLKGDKGDPGAGLPGP----------RGERGEPGVRGEDGHPGQ 2479

  Fly  1205 MGPIGFIGPPGAKGERGDIGYAGQLGFDGAEGLKGFQGD----QGPRGPPGITLP-AEKGDEGVA 1264
            .||.|.:||||::||:|:.|.|      ||.||||.:||    :||.||.|.... .|:|..|:.
Mouse  2480 EGPRGLVGPPGSRGEQGEKGAA------GAAGLKGDKGDSAVIEGPPGPRGAKGDMGERGPRGID 2538

  Fly  1265 GLDGRAGRPGHFGQKGAPGPPGENGPNGAIGHRGPQIQGP---PGPQGDVGFPGAPGHNGRHGLI 1326
            |..|..|..|:.|.||:.|.||:.|..|:||.||  :.||   ||..|..|.|||||.:|..|..
Mouse  2539 GDKGPRGESGNPGDKGSKGEPGDKGSAGSIGVRG--LTGPKGEPGAAGIPGEPGAPGKDGIPGFR 2601

  Fly  1327 GPKGELGDMGRQGERGESGYAIV----GRQGDIGDIGFQGEPGWDGAKGEQGYPGLPGKNGRVGA 1387
            |.||::|.||.:|.:||.|....    |.:||.|:.||.|.||..|.||:.|.|||||::|..|.
Mouse  2602 GDKGDIGFMGPRGLKGEKGIKGTCGRDGERGDKGEAGFPGRPGLAGKKGDMGEPGLPGQSGAPGK 2666

  Fly  1388 PGPRGPTGDAGWGGIDGMDGLVGPKGQPGVTYSYSMARPGDRGEPGLDGFQGEEGDGGAPGLIGF 1452
            .|..||.||.|:      ||..||||..|        ..|:||.||:.||.|..|:.|:.|.   
Mouse  2667 EGLIGPKGDRGF------DGQSGPKGDQG--------EKGERGPPGVGGFPGPRGNDGSSGP--- 2714

  Fly  1453 QGQRGAVGYRGDQGEVGYTGADGPQGQRGDKGYMGLTGAPGLRGLPGPQGEPAPA-PPAPKSRGF 1516
            .|..|.||.:|.:|..|..|..||.|:    ..:|..||||..|..|.||.|.|| |...|....
Mouse  2715 PGPPGGVGPKGPEGLQGQKGERGPPGE----SVVGAPGAPGTPGERGEQGRPGPAGPRGEKGEAA 2775

  Fly  1517 I-------FARHSQSVHVPQCPANTNLLWEGYSLSGNVAASRAVGQ 1555
            :       |.|...|.|   |......:..|.......||..|..|
Mouse  2776 LTEDDIRDFVRQEMSQH---CACQGQFIASGSRPLPGYAADTAGSQ 2818

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vkgNP_001260071.1 Collagen 60..119 CDD:189968 30/58 (52%)
Collagen 102..152 CDD:189968 24/49 (49%)
Collagen 277..334 CDD:189968 29/66 (44%)
Collagen 534..593 CDD:189968 30/67 (45%)
Collagen 814..871 CDD:189968 26/56 (46%)
Collagen 957..1014 CDD:189968 30/70 (43%)
Collagen 990..1049 CDD:189968 32/72 (44%)
Collagen 1070..1128 CDD:189968 29/75 (39%)
C4 1515..1624 CDD:128421 10/48 (21%)
C4 1625..1737 CDD:128421
Col7a1NP_031764.2 Nonhelical region (NC1). /evidence=ECO:0000255 18..1254
vWA_collagen_alphaI-XII-like 38..202 CDD:238759
fn3 234..318 CDD:278470
FN3 334..414 CDD:238020
fn3 427..488 CDD:278470
fn3 510..588 CDD:278470
FN3 599..681 CDD:238020
fn3 688..765 CDD:278470
fn3 778..856 CDD:278470
fn3 874..946 CDD:278470
FN3 959..1046 CDD:238020
VWA 1055..1223 CDD:278519
Cell attachment site. /evidence=ECO:0000255 1171..1173
Triple-helical region. /evidence=ECO:0000255 1255..2775 661/1623 (41%)
Interrupted collagenous region. /evidence=ECO:0000255 1255..1475 96/226 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1259..1934 308/728 (42%)
Collagen 1398..1444 CDD:189968 18/45 (40%)
Collagen 1470..1511 CDD:189968 17/43 (40%)
Collagen 1560..1624 CDD:189968 32/67 (48%)
Collagen 1601..1660 CDD:189968 30/60 (50%)
Collagen 1643..1695 CDD:189968 29/67 (43%)
Collagen 1839..1893 CDD:189968 25/53 (47%)
Collagen 1875..1931 CDD:189968 25/62 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1960..2773 351/866 (41%)
Cell attachment site. /evidence=ECO:0000255 2002..2004 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 2063..2065 0/1 (0%)
Collagen 2099..2158 CDD:189968 24/66 (36%)
Collagen 2233..2292 CDD:189968 25/58 (43%)
Collagen 2275..2338 CDD:189968 29/62 (47%)
Collagen 2448..2497 CDD:189968 23/58 (40%)
Collagen 2481..2559 CDD:189968 36/83 (43%)
Collagen 2530..2589 CDD:189968 25/60 (42%)
Collagen 2575..2632 CDD:189968 24/56 (43%)
Cell attachment site. /evidence=ECO:0000255 2601..2603 0/1 (0%)
Collagen 2605..2664 CDD:189968 27/58 (47%)
Cell attachment site. /evidence=ECO:0000255 2631..2633 0/1 (0%)
Collagen 2641..2693 CDD:189968 27/65 (42%)
Nonhelical region (NC2). /evidence=ECO:0000255 2776..2944 10/46 (22%)
KU 2877..2932 CDD:238057
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BAFZ
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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