Sequence 1: | NP_001260071.1 | Gene: | vkg / 33726 | FlyBaseID: | FBgn0016075 | Length: | 1940 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_034061.2 | Gene: | Col4a1 / 12826 | MGIID: | 88454 | Length: | 1669 | Species: | Mus musculus |
Alignment Length: | 1844 | Identity: | 763/1844 - (41%) |
---|---|---|---|
Similarity: | 908/1844 - (49%) | Gaps: | 358/1844 - (19%) |
- Green bases have known domain annotations that are detailed below.
Fly 38 CDCKGIKGRM------GAPGPIGVPGLEGPAGDIGPPGRAGPLGEKGDVGEYGEQGEKGHRGDIG 96
Fly 97 PKGEMGYPGIMGKSGEPGTPGPRGIDGCDGR---------------------------------- 127
Fly 128 ---------------------------PGMQGPSGAPGQNGVRGPPGKPGQQGPPGEAGEGGINS 165
Fly 166 KGTKGNRGETGQPGGVGPPGF-----------DGDRGSKGDTGYAGLT--GEKGDPGLPGPKGDT 217
Fly 218 GAVSELPYSLIGPPGAKGEPGDSLSGVLKPDDTLKGYKGYVGLQGDEGPQGPTGEQGAVGRNG-- 280
Fly 281 ---LP----GARGEIGGPGERGKPGKDGEPGRFGDKGMKG--APGWTGADGLDGSPGERGEDGFT 336
Fly 337 G--MPGVQGGAGPPGIYDPSLTKSLPGPIGSQGDI--------GPPGEQGPPGLPGKPGRRGPIG 391
Fly 392 LAGQSGDPGL----NGSRGPPGRSERGEAGDYGFIGPPGPQGPPGEAGLPGRYGLHGEPGQNVVG 452
Fly 453 PKGEPGLNGQPGLEGYRGDRGEV----GLPGDKGLPGEGYNIVGPPGSQGPPGFRGLPGDDGYNG 513
Fly 514 LRGLPGEKGLRGDDCPVCNAGPRGPRGQEGDTGYPGSHGNRG-----AIGLTGPRGVQGLQGNPG 573
Fly 574 RAGHKGLPGPAGIPGEPGK-VGAAGPDGKAIEVGSLRKGEIGDTGDSGHRGDTGDDGEKGRDGSD 637
Fly 638 GSKGERGETGQRGDYGDAGYQGRDGEPGRDGRDGAPGRNATTPKVYLIGEPGYDGIKGERGDDGD 702
Fly 703 TGFKGVKGEPN-PGQIYDNTGEPGEDGYTGPKGVKGAKGEQGAIGLRGEIGDRGPAGEVIPGPVG 766
Fly 767 AKGYP--GPTGDYGQQGAPGLPGRDGEPGLDGGIGYKGQRG--VPGQEVIQGEIGPPGRSGIKGF 827
Fly 828 PGDVGAPGQYGLAGRPGPKGVKGEQGPDGAVGQTGLPGNKGQRGDFLVGPPGPKGQPGRNGRQAP 892
Fly 893 HGAKGQKGEVGSLGQNG------QNGAKGSIGFSGRRGLLGNAGLQGLPGSPGIPGLPGMIGEIG 951
Fly 952 ERGEIGYNGRQGDIGPRGPNGEFGPKGLSGDDGPDGYPGANGLPGRKGETGNPGFPGRPGAKGVA 1016
Fly 1017 AYSGIKGDDGESGLTGPIGYPGAPGAKGQRGPVGDSQPALDGVAGRKGEVGSPGPNGLPGRHGLK 1081
Fly 1082 GQRGDRGLPGQQGRPGEPGAKGLGGYPGRNGINGLKGATGFPGPQGPKGPQGESGVVGLDGRNGQ 1146
Fly 1147 IGDQGP-----RGLIGEQGEQGEQGDEGEVGIPGRLENLRDRSFYRGFTGDQGLQGERGEQGDMG 1206
Fly 1207 PIGFIGPPGAKGERGDIGYAGQLGFDGAEG--LKGFQGDQGPRGPPGITLPAEKGDEGVAGLDGR 1269
Fly 1270 AGRPGHFGQKGAPGPPGENGPNGAIGHRG-PQIQGPPGPQGDVGFPGAPGHNGRHGLIGPKGELG 1333
Fly 1334 DMGRQGERGESGYAIVGRQGDIGDIGFQGEPGWDGAKGEQGYPGLPGK----NGRVGAPGPRGPT 1394
Fly 1395 GDAGWGGIDGMDGLVGPKGQPGVTYSYSMARPGDRGEPGLDGFQGEEGDGGAPGLIGFQGQRGAV 1459
Fly 1460 GYRGDQGEVGYTGADGPQGQRGDKGYMGLTGAPGLRGLPGPQGEPAPAPPAPKS--RGFIFARHS 1522
Fly 1523 QSVHVPQCPANTNLLWEGYSL---SGNVAASRAVGQDLGQSGSCMMRFTTMPYMLCDITNVCHFA 1584
Fly 1585 QNNDDSLWLSTAEPMPMTMTPIQGRDLMKYISRCVVCETTTRIIALHSQSMSIPDCPGGWEEMWT 1649
Fly 1650 GYSYFMSTLDNVGGVGQNLVSPGSCLEEFRAQPVIECHGHGRCNYYDALASFWLTVIEEQDQFVQ 1714
Fly 1715 PRQQTLKA-DFTSKISRCTVCRRR 1737 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
vkg | NP_001260071.1 | Collagen | 60..119 | CDD:189968 | 28/58 (48%) |
Collagen | 102..152 | CDD:189968 | 28/110 (25%) | ||
Collagen | 277..334 | CDD:189968 | 28/67 (42%) | ||
Collagen | 534..593 | CDD:189968 | 29/64 (45%) | ||
Collagen | 814..871 | CDD:189968 | 27/56 (48%) | ||
Collagen | 957..1014 | CDD:189968 | 23/56 (41%) | ||
Collagen | 990..1049 | CDD:189968 | 31/58 (53%) | ||
Collagen | 1070..1128 | CDD:189968 | 27/57 (47%) | ||
C4 | 1515..1624 | CDD:128421 | 61/111 (55%) | ||
C4 | 1625..1737 | CDD:128421 | 58/112 (52%) | ||
Col4a1 | NP_034061.2 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 47..1443 | 636/1606 (40%) | |
Triple-helical region | 173..1440 | 595/1471 (40%) | |||
Collagen | 275..331 | CDD:189968 | 31/75 (41%) | ||
Collagen | 510..585 | CDD:189968 | 41/98 (42%) | ||
Collagen | <645..688 | CDD:189968 | 19/50 (38%) | ||
Collagen | 690..745 | CDD:189968 | 25/61 (41%) | ||
Collagen | 737..788 | CDD:189968 | 25/54 (46%) | ||
Collagen | 839..896 | CDD:189968 | 28/59 (47%) | ||
Collagen | 876..935 | CDD:189968 | 28/60 (47%) | ||
Collagen | 975..1032 | CDD:189968 | 26/65 (40%) | ||
Collagen | 1058..1116 | CDD:189968 | 28/62 (45%) | ||
Collagen | 1088..1147 | CDD:189968 | 30/61 (49%) | ||
Collagen | 1269..1326 | CDD:189968 | 25/58 (43%) | ||
C4 | 1446..1552 | CDD:279721 | 58/108 (54%) | ||
C4 | 1556..1666 | CDD:279721 | 57/109 (52%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 131 | 1.000 | Domainoid score | I5118 |
eggNOG | 1 | 0.900 | - | - | E33208_3BAFZ | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D41315at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000443 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_100768 | |
Panther | 1 | 1.100 | - | - | O | PTHR24023 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
9 | 8.780 |