| Sequence 1: | NP_001260071.1 | Gene: | vkg / 33726 | FlyBaseID: | FBgn0016075 | Length: | 1940 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | XP_011241624.1 | Gene: | Col13a1 / 12817 | MGIID: | 1277201 | Length: | 760 | Species: | Mus musculus |
| Alignment Length: | 827 | Identity: | 299/827 - (36%) |
|---|---|---|---|
| Similarity: | 352/827 - (42%) | Gaps: | 216/827 - (26%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 45 GRMGAPGPIGVPGLEGPAGDIGPPGRAGPL----------------------------GEKGDVG 81
Fly 82 EYGEQGEKGHRGDI-----------------GPKGEMGYPGIMGKSGEPGTPGPRGIDGCDGRPG 129
Fly 130 MQGPSGAPGQNGVRGPPGKPGQQGPPGEAGEGGINSKGTKGNRGETGQPGGVGPPGFDGDRGSKG 194
Fly 195 DTGYAGLTGEKGDPGLPGPKGDTGAVSELPYSLI---------GPPGAKGEPGDSLSGVLKPDDT 250
Fly 251 LKGYKGYVGLQGDEGPQGPTGEQGAVGRNGLPGARGEIGGPGERGKPGKDGEP------GRFGDK 309
Fly 310 GMKGAPGWTGADGLDG--SPGERGEDGFTGMPGVQGGAGPPGIYDPSLTKSLPGPIGSQGDIGPP 372
Fly 373 -----GEQGPPGLPGKPGRRGPIGLAGQSGDPGLNGSRGPPGRSERGEAGDYGFIGPPGPQGPPG 432
Fly 433 EAGLPGRYGLHGEPGQNV-----VGPKGEPGLNGQPGLEGYRGDRGEVGLP------GDK---GL 483
Fly 484 PGEGYNIVGPPGSQGPPGFRGLPGDDGYNGLRGLPGEKGLRGDDCPVCNAGPRGPRGQEGDTGYP 548
Fly 549 GSHGNRGAIGLTGPRGVQGLQGNPGRAGHKGLPGPAGIPGEPGKVGAAGPDGKAIEVGSLRKGEI 613
Fly 614 GDTGDSGHRGDTGDDGEKGRDGSDGSKGERGETGQRGDYGDAGYQGRDGEPGRDGRDGAPGRNAT 678
Fly 679 TPKVYLIGEPGYDGIKGERGDDGDTGFKGVKGEPNPGQIYDNTGEPGEDGYTGPKGVKGAKGEQG 743
Fly 744 AIGLRGEIGDRGPAGEVIPGPVGAKGYPGPTGDYGQQGAPGLPGRDG 790 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| vkg | NP_001260071.1 | Collagen | 60..119 | CDD:189968 | 18/103 (17%) |
| Collagen | 102..152 | CDD:189968 | 20/49 (41%) | ||
| Collagen | 277..334 | CDD:189968 | 29/64 (45%) | ||
| Collagen | 534..593 | CDD:189968 | 30/58 (52%) | ||
| Collagen | 814..871 | CDD:189968 | |||
| Collagen | 957..1014 | CDD:189968 | |||
| Collagen | 990..1049 | CDD:189968 | |||
| Collagen | 1070..1128 | CDD:189968 | |||
| C4 | 1515..1624 | CDD:128421 | |||
| C4 | 1625..1737 | CDD:128421 | |||
| Col13a1 | XP_011241624.1 | Collagen | 147..220 | CDD:189968 | 32/72 (44%) |
| Collagen | 515..573 | CDD:189968 | 29/63 (46%) | ||
| Collagen | 658..709 | CDD:189968 | 27/94 (29%) | ||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 0 | 0.000 | Not matched by this tool. | |||
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| Isobase | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 1 | 0.910 | |||||