DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vkg and col4a6

DIOPT Version :9

Sequence 1:NP_001260071.1 Gene:vkg / 33726 FlyBaseID:FBgn0016075 Length:1940 Species:Drosophila melanogaster
Sequence 2:XP_012824447.1 Gene:col4a6 / 100493153 XenbaseID:XB-GENE-6034568 Length:1709 Species:Xenopus tropicalis


Alignment Length:1862 Identity:741/1862 - (39%)
Similarity:898/1862 - (48%) Gaps:344/1862 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 GKICNTTLCDCKGIKGRMGAPGPIGVPGLEGPAGDIGPPGRAGP---LGEKGDVGEYGEQGEKGH 91
            |:.|:.. |.|...||..|.||.:      ||.|.:||||.:||   .|:||:.|:||.|||.|.
 Frog    35 GRDCSGG-CKCFPEKGARGRPGQL------GPQGPMGPPGFSGPEGVAGQKGERGDYGFQGEAGP 92

  Fly    92 RGDIGPKGEMGYPGIMGKSGEPGTPGPRGIDGCDGRPGMQGPSGAPGQNGVRGPPGKPGQQGPPG 156
            :||:|.:|..|:.|..|..|..|..|.||:.|.||..|..|.||.||.||..|..|.||..||.|
 Frog    93 KGDLGHRGVTGFDGNDGTPGHVGQAGHRGLPGLDGCNGTIGDSGFPGSNGFPGQSGLPGPIGPKG 157

  Fly   157 EAGEGGINSKGTKGNRGETGQPG--GV-GPPGFDGDRGSKGDTGYAGLTGEKGDPGLPGPKGDTG 218
            :.||....|...:|.:||.|.||  |: ||.|..|..|..|..|:.|:.|..|.||:|||.|:.|
 Frog   158 QKGEPSFISSDIRGLKGEDGIPGQEGLPGPRGPPGPEGMSGTAGFPGVPGPPGLPGMPGPTGNRG 222

  Fly   219 AVSELPYSLIGPPGAKGEPGDSLSGVLKPDDTLKGYKGYVGLQGDEGPQGPTGE----------Q 273
            .            |..||.||               ||.||..|..||:..||.          |
 Frog   223 V------------GYYGENGD---------------KGDVGPPGPPGPRASTGPVEFTESAKGIQ 260

  Fly   274 GAVGRNGLPGARGEIGGP--------GERGKPGKDGEPGRFGDKGMKGAPGWTGADGLDGSPGER 330
            |..|..||||.|||.|.|        ||:|:.|..|.||..|..|:.|:.|:.|..|..|.||..
 Frog   261 GDKGDRGLPGFRGEQGFPGLEGFGFSGEKGEKGILGLPGPRGFPGLDGSNGYPGRKGQPGLPGFD 325

  Fly   331 GEDGFTGMPGVQGGAGPPG--IY---DPSLTKSLPGPIGSQGDIGPPGE---QGPPGLPGKPGR- 386
            |..|||||.|.||..|.||  ||   |.......||..|..|.:|.||:   .||||.||:||. 
 Frog   326 GLHGFTGMKGEQGNIGLPGTPIYIDEDGLAITGPPGDPGPSGFLGMPGDDGISGPPGPPGQPGLP 390

  Fly   387 ---RGPIGLAGQSGDPGLNGSRGPPGRSERGEAGDYGFIGPPGPQGPPGEAGLPGRYGLHGEPGQ 448
               ||..|.:|..|..||.|.:|.||:...|..|:.|.:|.|||.|||||.|..|....|    |
 Frog   391 SFVRGNPGPSGFPGVQGLKGEQGNPGKPGFGPPGNTGRVGQPGPPGPPGEDGPSGEIAGH----Q 451

  Fly   449 NVVGPKGEPGLNGQPGLEGYRGDRGEVGLPGDKGLPG----EGYNI-VGPPGSQGPPGFRGLPGD 508
            ..:   |||||   ||:.|.||..|::|..|.||..|    ||.:: .|.|||.|.||.||.|  
 Frog   452 TAL---GEPGL---PGVPGNRGPPGQIGPKGYKGADGDCACEGGDLSKGSPGSPGLPGQRGSP-- 508

  Fly   509 DGYNGLRGLPGEKGLRGDD-CPVCNAGP---------RGPRGQEGDTGYPGSHGNRGAIGLTGPR 563
             |::||.|:||:.|.||.| .|    ||         .||:|::||..|....|.||..|..|||
 Frog   509 -GFSGLNGIPGDPGRRGSDGLP----GPPGSPGLPWFPGPKGEKGDPVYSTGKGPRGDPGSVGPR 568

  Fly   564 GVQGLQGNPGRAGHKGLPGPAGIPGEPGKVGAAGPDGKAIEVGSLRKGEIGDTGDSGHRGDTGDD 628
            |..|..|.|||.|:.||||..|.||                                    ||..
 Frog   569 GAFGAVGKPGRYGYPGLPGLKGAPG------------------------------------TGGS 597

  Fly   629 GEKGRDGSDGSKGERGETGQRG-DY-GDAGYQGRDGEPGRDGRDGAPG----------------- 674
            ||||..|..|.||.|||||..| .| |..|.:|..|:||:.|..|.||                 
 Frog   598 GEKGYPGLLGPKGSRGETGPPGIGYPGSPGPRGLPGDPGQAGLPGQPGLAGPPGDCCCGANVGNG 662

  Fly   675 ----RNATTPKVYLIGEPGYDGIKGE------------RGDDGDTGFKGVKGEPNPGQIYDNTGE 723
                ...||....:.||||..||:|.            .|..|..||.|.||:|         |.
 Frog   663 DLVTEGGTTLPCVIAGEPGPPGIRGTPGFPGRKGNMGFPGVPGQQGFDGAKGQP---------GN 718

  Fly   724 PGEDGYTGPKGVKGAKGEQGAIGLRGEIGDRGPAGEV-IPGPVGAKGYPGPT--GDYGQQGAPGL 785
            ||..|..||.|..|.:||:||.|..|..|..|..|:. |||..|.||..|..  ...|..|.|||
 Frog   719 PGFGGIPGPPGFPGPRGEEGAPGFNGLPGSEGLPGKFGIPGSPGLKGLRGEVLGATPGAPGEPGL 783

  Fly   786 PGRDGEPGLDGGIGYKGQRGVPGQEVIQGEIGPPGRSGIKGFPGDVGAPGQYGLAGRPGPKGVKG 850
            ||.:|:.||.|..|..||||..|:..:.|..|..|.||..|.||..|.|| :|     |..|:||
 Frog   784 PGINGDKGLPGDAGLSGQRGFDGRPGLMGAKGERGNSGFPGSPGPKGQPG-FG-----GSMGIKG 842

  Fly   851 EQGPDGAVGQ------TGLPGNKGQRGDFLVGPPGPKGQPGRNGRQAPHGAKGQKGEVGSLGQNG 909
            :|||.|.:|.      .|.|||||..||  .|.||..|..||.|  || |..|:.||:|..|..|
 Frog   843 KQGPPGDIGYPGSPGCQGFPGNKGVPGD--RGIPGIAGMKGRPG--AP-GDAGRPGELGLPGLPG 902

  Fly   910 QNGAKGSIGFSGRRGLLGNAGLQGLPGSPGIPGLPGMI---------GEIGERGEIGYNGRQGDI 965
            ..|.:|..||.|.:|..|..|::|..|.||||||||:.         |:.|::|..|..|.:|..
 Frog   903 TGGREGLPGFQGLKGEKGFPGVRGFAGMPGIPGLPGVSGYKGICGSPGQDGQKGNDGIKGVKGLP 967

  Fly   966 GPRGPNGEFGP-------KGLSGDDGPDGYP------GANGLPGRKGETGNPGFPGRPGAKGVAA 1017
            |.|||.|...|       ||..|:.||.|.|      |..|.||..|..|||||||.||..    
 Frog   968 GDRGPPGAVMPPPPGLLSKGAQGEQGPSGPPGFTGPRGDKGFPGLPGIPGNPGFPGNPGRD---- 1028

  Fly  1018 YSGIKGDDGESGLTGPIGYPGAPGAKGQRGPVGDSQPALDGVAGRKGEVGSPGPNGLPGRHGLKG 1082
                ||..|:.|..|..|.||.||.||:.|.:|     ..|:.|..|..|.||.:|.||..||.|
 Frog  1029 ----KGFPGDPGFPGAFGRPGFPGPKGEPGIIG-----FPGMPGPNGADGIPGVSGFPGSPGLPG 1084

  Fly  1083 QRGDRGLPGQQGRPGEPGAKGLGGYPGRNGINGLK------GATGFPGPQGPKGPQGESGVVGLD 1141
            .:|:||  ...|:||.||.||..|.||.:|:.|..      |:.|..|..|||||.||.|.:|..
 Frog  1085 PKGERG--ETLGQPGRPGVKGETGIPGISGLRGFDGMPGDVGSIGISGNPGPKGPPGEFGRIGQP 1147

  Fly  1142 GRNGQIGDQGPRGLIGEQGEQGEQGDEGEVGIPGRLENLRDRSFYRGFTGDQ------GLQGERG 1200
            |..||.|.:|..||:|..|..|..|..|..|.||          .:||.|.|      ||.|.:|
 Frog  1148 GNPGQQGYRGNPGLVGSSGLPGSPGSPGYPGAPG----------LKGFPGSQGIGGLNGLAGSKG 1202

  Fly  1201 EQG-----DMGPIGFIGPPGAKGER-------GDIGYAGQLGFDGAEGLKGFQGDQGPRGPPGIT 1253
            ..|     :.|..|..|.||.||||       |..|:.|..||.|..||.|..|..|..||||.:
 Frog  1203 SPGTPGLSEAGRPGTPGFPGPKGERGSPSTISGQPGFPGSKGFPGERGLPGAVGLPGLPGPPGFS 1267

  Fly  1254 ----LPAEKGDEGVAGLDGRAGRPGHFGQKGAPGPPGENGPNGAIGHRGPQIQGPPGPQGDVGFP 1314
                :|...||.|..|.||.||.||..|.:|.|||....|..|..|:  |.|.|.||.:|:.|.|
 Frog  1268 FPSAIPGRPGDPGFPGRDGEAGLPGLPGPRGPPGPGSNQGDTGDSGY--PGIPGRPGIKGEPGIP 1330

  Fly  1315 GAPGHNGRHGLIGPKGELGDMGRQGERGESGYAIVGRQGDIGDIGFQGEPGWDGAKGEQGYPGLP 1379
            |.||..|..||.|.:|:.|.:|..           |::|.:||      ||:.|.|||:|.||||
 Frog  1331 GNPGSPGAPGLKGLRGDPGFIGSP-----------GKEGSVGD------PGFPGLKGERGNPGLP 1378

  Fly  1380 GKNGRVGAPGP-------RGPTGDAGWGGIDGMDGLVGPKGQPGVTYSYSMARPGDRGEPGLDGF 1437
            |..||   |||       :.|.|..|..||:|.||::|..|.||..     ..||.:|.||..|.
 Frog  1379 GPQGR---PGPPPSIEDYQIPIGLPGLPGINGFDGVLGEIGSPGPN-----GPPGAKGFPGRSGQ 1435

  Fly  1438 QGEEGDGGAPGLIGFQGQRGAVGYRGDQGEVGYTGADGPQGQRGDKGYMGLTGAPGLRGLPGPQG 1502
            .|..|..||||.|            ||.||:|..|..|.:|..|.:|.:||.|.|| |.:     
 Frog  1436 MGRNGPPGAPGPI------------GDPGEIGIPGTSGLEGSPGKQGAVGLPGMPG-RSV----- 1482

  Fly  1503 EPAPAPPAPKSRGFIFARHSQSVHVPQCPANTNLLWEGYSLSGNVAASRAVGQDLGQSGSCMMRF 1567
                      ..|:...:||||..:|.||.....||:||||.......:|..||||.:|||:.||
 Frog  1483 ----------GVGYTLVKHSQSEQIPPCPLGMARLWDGYSLLFVEGQEKAHNQDLGLAGSCLPRF 1537

  Fly  1568 TTMPYMLCDITNVCHFAQNNDDSLWLSTAEPMPMTMTPIQGRDLMKYISRCVVCETTTRIIALHS 1632
            :|||::.|:|..||::|..||.|.||||..|:|  |.|:...::..|||||.|||.:::.:|:||
 Frog  1538 STMPFIYCNINEVCYYASRNDKSYWLSTTAPIP--MMPVGSTEIKNYISRCSVCEASSQAVAVHS 1600

  Fly  1633 QSMSIPDCPGGWEEMWTGYSYFMSTLDNVGGVGQNLVSPGSCLEEFRAQPVIECHG-HGRCNYYD 1696
            |..:||.||.||..:|.|||:.|.|.....|.||:|||||||||:|||.|.|||.| .|.|:|:.
 Frog  1601 QDNTIPQCPDGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECSGARGTCHYFA 1665

  Fly  1697 ALASFWLTVIEEQDQFVQ-PRQQTLKA-DFTSKISRCTVCRR 1736
            ...|||||.:||..||.: |..:|||: ...:::|||.||.:
 Frog  1666 NKYSFWLTTVEETRQFARPPTSETLKSGQLRTRVSRCQVCMK 1707

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vkgNP_001260071.1 Collagen 60..119 CDD:189968 29/61 (48%)
Collagen 102..152 CDD:189968 23/49 (47%)
Collagen 277..334 CDD:189968 27/64 (42%)
Collagen 534..593 CDD:189968 29/67 (43%)
Collagen 814..871 CDD:189968 27/62 (44%)
Collagen 957..1014 CDD:189968 30/69 (43%)
Collagen 990..1049 CDD:189968 27/58 (47%)
Collagen 1070..1128 CDD:189968 25/63 (40%)
C4 1515..1624 CDD:128421 51/108 (47%)
C4 1625..1737 CDD:128421 57/115 (50%)
col4a6XP_012824447.1 Collagen 287..346 CDD:189968 28/58 (48%)
Collagen 455..521 CDD:189968 34/71 (48%)
Collagen 595..651 CDD:189968 26/55 (47%)
Collagen 788..847 CDD:189968 28/64 (44%)
Collagen 836..894 CDD:189968 28/62 (45%)
Collagen <986..1027 CDD:189968 20/40 (50%)
Collagen 1033..1091 CDD:189968 27/64 (42%)
Collagen 1151..1208 CDD:189968 23/66 (35%)
PRK14959 <1163..1287 CDD:184923 47/133 (35%)
Collagen 1316..1373 CDD:189968 27/73 (37%)
C4 1486..1590 CDD:366626 48/105 (46%)
C4 1594..1706 CDD:366626 56/111 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D41315at33208
OrthoFinder 1 1.000 - - FOG0000443
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24023
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.110

Return to query results.
Submit another query.