Sequence 1: | NP_001260071.1 | Gene: | vkg / 33726 | FlyBaseID: | FBgn0016075 | Length: | 1940 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_012824447.1 | Gene: | col4a6 / 100493153 | XenbaseID: | XB-GENE-6034568 | Length: | 1709 | Species: | Xenopus tropicalis |
Alignment Length: | 1862 | Identity: | 741/1862 - (39%) |
---|---|---|---|
Similarity: | 898/1862 - (48%) | Gaps: | 344/1862 - (18%) |
- Green bases have known domain annotations that are detailed below.
Fly 30 GKICNTTLCDCKGIKGRMGAPGPIGVPGLEGPAGDIGPPGRAGP---LGEKGDVGEYGEQGEKGH 91
Fly 92 RGDIGPKGEMGYPGIMGKSGEPGTPGPRGIDGCDGRPGMQGPSGAPGQNGVRGPPGKPGQQGPPG 156
Fly 157 EAGEGGINSKGTKGNRGETGQPG--GV-GPPGFDGDRGSKGDTGYAGLTGEKGDPGLPGPKGDTG 218
Fly 219 AVSELPYSLIGPPGAKGEPGDSLSGVLKPDDTLKGYKGYVGLQGDEGPQGPTGE----------Q 273
Fly 274 GAVGRNGLPGARGEIGGP--------GERGKPGKDGEPGRFGDKGMKGAPGWTGADGLDGSPGER 330
Fly 331 GEDGFTGMPGVQGGAGPPG--IY---DPSLTKSLPGPIGSQGDIGPPGE---QGPPGLPGKPGR- 386
Fly 387 ---RGPIGLAGQSGDPGLNGSRGPPGRSERGEAGDYGFIGPPGPQGPPGEAGLPGRYGLHGEPGQ 448
Fly 449 NVVGPKGEPGLNGQPGLEGYRGDRGEVGLPGDKGLPG----EGYNI-VGPPGSQGPPGFRGLPGD 508
Fly 509 DGYNGLRGLPGEKGLRGDD-CPVCNAGP---------RGPRGQEGDTGYPGSHGNRGAIGLTGPR 563
Fly 564 GVQGLQGNPGRAGHKGLPGPAGIPGEPGKVGAAGPDGKAIEVGSLRKGEIGDTGDSGHRGDTGDD 628
Fly 629 GEKGRDGSDGSKGERGETGQRG-DY-GDAGYQGRDGEPGRDGRDGAPG----------------- 674
Fly 675 ----RNATTPKVYLIGEPGYDGIKGE------------RGDDGDTGFKGVKGEPNPGQIYDNTGE 723
Fly 724 PGEDGYTGPKGVKGAKGEQGAIGLRGEIGDRGPAGEV-IPGPVGAKGYPGPT--GDYGQQGAPGL 785
Fly 786 PGRDGEPGLDGGIGYKGQRGVPGQEVIQGEIGPPGRSGIKGFPGDVGAPGQYGLAGRPGPKGVKG 850
Fly 851 EQGPDGAVGQ------TGLPGNKGQRGDFLVGPPGPKGQPGRNGRQAPHGAKGQKGEVGSLGQNG 909
Fly 910 QNGAKGSIGFSGRRGLLGNAGLQGLPGSPGIPGLPGMI---------GEIGERGEIGYNGRQGDI 965
Fly 966 GPRGPNGEFGP-------KGLSGDDGPDGYP------GANGLPGRKGETGNPGFPGRPGAKGVAA 1017
Fly 1018 YSGIKGDDGESGLTGPIGYPGAPGAKGQRGPVGDSQPALDGVAGRKGEVGSPGPNGLPGRHGLKG 1082
Fly 1083 QRGDRGLPGQQGRPGEPGAKGLGGYPGRNGINGLK------GATGFPGPQGPKGPQGESGVVGLD 1141
Fly 1142 GRNGQIGDQGPRGLIGEQGEQGEQGDEGEVGIPGRLENLRDRSFYRGFTGDQ------GLQGERG 1200
Fly 1201 EQG-----DMGPIGFIGPPGAKGER-------GDIGYAGQLGFDGAEGLKGFQGDQGPRGPPGIT 1253
Fly 1254 ----LPAEKGDEGVAGLDGRAGRPGHFGQKGAPGPPGENGPNGAIGHRGPQIQGPPGPQGDVGFP 1314
Fly 1315 GAPGHNGRHGLIGPKGELGDMGRQGERGESGYAIVGRQGDIGDIGFQGEPGWDGAKGEQGYPGLP 1379
Fly 1380 GKNGRVGAPGP-------RGPTGDAGWGGIDGMDGLVGPKGQPGVTYSYSMARPGDRGEPGLDGF 1437
Fly 1438 QGEEGDGGAPGLIGFQGQRGAVGYRGDQGEVGYTGADGPQGQRGDKGYMGLTGAPGLRGLPGPQG 1502
Fly 1503 EPAPAPPAPKSRGFIFARHSQSVHVPQCPANTNLLWEGYSLSGNVAASRAVGQDLGQSGSCMMRF 1567
Fly 1568 TTMPYMLCDITNVCHFAQNNDDSLWLSTAEPMPMTMTPIQGRDLMKYISRCVVCETTTRIIALHS 1632
Fly 1633 QSMSIPDCPGGWEEMWTGYSYFMSTLDNVGGVGQNLVSPGSCLEEFRAQPVIECHG-HGRCNYYD 1696
Fly 1697 ALASFWLTVIEEQDQFVQ-PRQQTLKA-DFTSKISRCTVCRR 1736 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
vkg | NP_001260071.1 | Collagen | 60..119 | CDD:189968 | 29/61 (48%) |
Collagen | 102..152 | CDD:189968 | 23/49 (47%) | ||
Collagen | 277..334 | CDD:189968 | 27/64 (42%) | ||
Collagen | 534..593 | CDD:189968 | 29/67 (43%) | ||
Collagen | 814..871 | CDD:189968 | 27/62 (44%) | ||
Collagen | 957..1014 | CDD:189968 | 30/69 (43%) | ||
Collagen | 990..1049 | CDD:189968 | 27/58 (47%) | ||
Collagen | 1070..1128 | CDD:189968 | 25/63 (40%) | ||
C4 | 1515..1624 | CDD:128421 | 51/108 (47%) | ||
C4 | 1625..1737 | CDD:128421 | 57/115 (50%) | ||
col4a6 | XP_012824447.1 | Collagen | 287..346 | CDD:189968 | 28/58 (48%) |
Collagen | 455..521 | CDD:189968 | 34/71 (48%) | ||
Collagen | 595..651 | CDD:189968 | 26/55 (47%) | ||
Collagen | 788..847 | CDD:189968 | 28/64 (44%) | ||
Collagen | 836..894 | CDD:189968 | 28/62 (45%) | ||
Collagen | <986..1027 | CDD:189968 | 20/40 (50%) | ||
Collagen | 1033..1091 | CDD:189968 | 27/64 (42%) | ||
Collagen | 1151..1208 | CDD:189968 | 23/66 (35%) | ||
PRK14959 | <1163..1287 | CDD:184923 | 47/133 (35%) | ||
Collagen | 1316..1373 | CDD:189968 | 27/73 (37%) | ||
C4 | 1486..1590 | CDD:366626 | 48/105 (46%) | ||
C4 | 1594..1706 | CDD:366626 | 56/111 (50%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D41315at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000443 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR24023 |
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 3.110 |