DRSC/TRiP Functional Genomics Resources

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Protein Alignment vkg and col4a5

DIOPT Version :9

Sequence 1:NP_001260071.1 Gene:vkg / 33726 FlyBaseID:FBgn0016075 Length:1940 Species:Drosophila melanogaster
Sequence 2:XP_004916922.2 Gene:col4a5 / 100492984 XenbaseID:XB-GENE-6041869 Length:1691 Species:Xenopus tropicalis


Alignment Length:1799 Identity:764/1799 - (42%)
Similarity:914/1799 - (50%) Gaps:223/1799 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 ADGKIC----NTTLCDCKGIKGRMGAPGPIGVPGLEGP---AGDIGPPGRAGPLGEKGDVGEYGE 85
            |:...|    :.:.|||.|:||..|..   |:|||||.   .|..||.|..||.|.|||.|..|.
 Frog    26 AESAACQGCTSVSKCDCSGVKGEKGER---GLPGLEGHLGLPGFPGPEGPPGPRGPKGDSGLSGS 87

  Fly    86 QGEKGHRGDIGPKGEMGYPGIMGKSGEPGTPGPRGIDGCDGRPGMQGPSGAPGQN---GVRGPPG 147
            .|.||.||..||.|..|.||..|..|..|.|||.||.||:|..|.:|..|.||.:   |:.||||
 Frog    88 PGPKGIRGPPGPPGFPGNPGQPGLPGHDGEPGPAGIPGCNGTKGDRGFPGGPGFSGTPGIPGPPG 152

  Fly   148 KPGQQGPPGEAGEGGINSKGTKGNRGETGQPGGVGPPGFDGDRGSKGDTGYAGLTGEKGDPGLPG 212
            .||.:|.|||:.......||..|..|..|.||..||.|..|..|..|.   |||.|..|.||.||
 Frog   153 LPGVKGDPGESFPLAPGQKGDPGLPGLPGLPGRTGPIGVQGPVGRPGP---AGLPGSPGVPGPPG 214

  Fly   213 PKGDTGAVSELPYSLIGPPGAKGEPG--------DSLSGVLKPDDTL-KGYKGYVGLQGDEGPQG 268
            |||:.|      .:..|..|.|||||        ..|..|..|..|: ||.||..|.||..|.:|
 Frog   215 PKGNMG------LNFQGSKGEKGEPGIQGLPGPPGQLEQVEPPQTTIQKGEKGIPGDQGFPGERG 273

  Fly   269 PTGEQGAVGRNGLPGARGEIGGPGERGKPGKDGEPGRFGDKGMKGAPGWTGADGLDGSPGERGED 333
            |.|..|..|  |..|.:||.|.||:.|||||||:.|..|.:|.:|.||..|..|.||..|::||:
 Frog   274 PMGPPGPPG--GAKGEKGEPGEPGKIGKPGKDGKIGLPGGEGFRGDPGLPGGPGRDGDKGQKGEN 336

  Fly   334 GFTGMPGV------QGGAGPPGIYDPSLTKSLPGPIGSQGDIGPPGEQGPPGLPGKPGRR--GPI 390
            |..|.||.      .|..||.|...|      ||..|.:||.|.||.|||||.||.||..  ||.
 Frog   337 GLPGPPGEVISRPGTGRVGPKGNTGP------PGITGPKGDRGFPGLQGPPGFPGTPGTSSVGPS 395

  Fly   391 GLAGQSGDPGLNGSRGPPGRSERGEAGDYGFIGPPGPQGPPGEAGLPGRYGLHGEPGQNVVGPKG 455
            |..|..|:.|..|..||||.|..|..|..|..|||||      .|||||      ||.:.||   
 Frog   396 GNPGLPGERGQKGDDGPPGISIPGLPGSEGLAGPPGP------PGLPGR------PGTSAVG--- 445

  Fly   456 EPGLNGQPGLEGYRGDRGEVGLPGDKGLPGEGYNIVGPPGSQGPPGFRGLPGDDGYNGLRGLPGE 520
             |.:..||||                                  ||.:|||||.|:.|.|   |:
 Frog   446 -PAMVCQPGL----------------------------------PGTQGLPGDPGFLGER---GQ 472

  Fly   521 KGLRGDDCPVC-NAGPRGPRGQEGDTGYPGSHGNRGAIGLTGPRGVQGLQGNPGRAGHKGLPGPA 584
            ||.:||.|..| ..|..||:|..|..|:|||.|:.||.|..|..|:.|.         .|||||.
 Frog   473 KGDKGDTCYNCIGNGILGPKGDPGLPGFPGSPGSPGAPGQKGAMGIPGT---------NGLPGPP 528

  Fly   585 GIPGEPGKVGAAGPDGKAIEVGSLRKGEIGDTGDSGHRGDTGDDGEKGRDGSDGSKGERGETG-- 647
            |.||.||..|..||.|:..||....|||.||.|..|..|..|.||..||||:.|..|.:||.|  
 Frog   529 GFPGNPGISGRPGPKGEPGEVIGEIKGEKGDPGFPGPAGSPGLDGVPGRDGTPGIPGPKGEPGGF 593

  Fly   648 -QRGDYGDAGYQGRDGEPGRDGRDGAPGRNATTPKVYLIGEPGYDGIKGERGDDGDTGFKGVKGE 711
             .:||.|..|..|..|.||..|..|.||...:       |.||..||:|..|..|..|..|.|| 
 Frog   594 VLKGDRGFPGDIGFPGHPGDRGLMGPPGFGPS-------GPPGEKGIQGVSGRPGAPGIPGPKG- 650

  Fly   712 PNPGQIYDNTGE------PGEDGYTGPKGVKGAKGEQGAIGLRGEIGDRGPAGEVIPGPVGAKGY 770
             :|||.....|:      ||..|..|..|..|..|:.|..|:.|..|:.|..|..:||..||||:
 Frog   651 -SPGQTVMEKGDFGPPGLPGIPGDAGTPGEPGLPGQPGIPGVPGSKGEPGIPGIGLPGSAGAKGF 714

  Fly   771 PGPTGDYGQQGAPGLPGRDGEPGLDG--------GIGYKGQRGVPGQEVIQGEIGPPGRSGIKGF 827
            ||.||..|..|..|.||.||.||..|        |.|..|..|.||...::|..||.|.|   ||
 Frog   715 PGNTGPPGAPGLAGRPGSDGSPGQPGLPGPKGDPGFGLPGLPGSPGPAGLKGSQGPKGES---GF 776

  Fly   828 PGDVGAPGQYGLAGRPGPKGVKGEQGPDGAVGQTGLPGNKGQRGDFLVGPPGPKGQPGRNGRQAP 892
            ||..|.||:.|..|..||||..|:.|..|..|..|:||..||      ||||..|.||..|...|
 Frog   777 PGSPGLPGRAGFDGPVGPKGDSGQNGLPGTPGPPGVPGAGGQ------GPPGQPGLPGPAGPPGP 835

  Fly   893 ---HGAKGQKGEVGSLG--QNGQNGAKGSIGFSGRRGLLGNAGLQGLPGSPGIPGLPGMIGEIGE 952
               .|.:|:||:.|:.|  ..|..|.:||.||.|.||..|.      ||.||..|..|:.|..|.
 Frog   836 TGNTGIQGEKGDPGAPGFDMPGPPGDRGSPGFPGERGFTGP------PGPPGAQGRDGLPGFSGA 894

  Fly   953 RGEIGYNGRQGDIGPRGPNGEFGPKGLSGDDGPDGYPGANGLPGRKGETGNPGFPGRPGAKGVA- 1016
            :||:|..|..|.:||.|..|..|..|..|:||..|.||.:||||.:||.|..|.||.||....| 
 Frog   895 KGEMGVMGPPGSVGPAGNPGNPGLPGSKGNDGNPGQPGLSGLPGAEGEKGERGLPGPPGRVDSAN 959

  Fly  1017 -AYSGIKGD---DGESGLTGPIGYPGAPGAKGQRGPVGDSQPALDGVAGRKGEVGSPGPNGLPGR 1077
             .:.|:||:   .|.|||:|..|..|.||..|..|.:|  .|...|:.|.||:.|.||..|..|.
 Frog   960 LQFKGVKGEPGLPGSSGLSGAKGAAGLPGNSGSPGQIG--IPGSPGLPGLKGDSGLPGQPGTSGP 1022

  Fly  1078 HGLKGQRGDRGL---PGQQGRPGEPGAKGLGGYPGRNGINGLKG-----ATGFPGPQGPKGPQGE 1134
            .||||..|:.||   ||.:|.||:||..|..|.||.:|:.|.||     ..|.||..|.||..|:
 Frog  1023 PGLKGSMGEMGLPGPPGSKGSPGQPGRPGSAGSPGFSGLKGEKGEPGISGAGIPGFPGQKGEPGQ 1087

  Fly  1135 SGVVGLDGRNGQIGDQGPRGLIGEQGEQGEQGDEGEVGIPGR--LENLRDRSFYRGFTGDQGLQG 1197
            :|..|..|..|..|:.|..||.|..|.:|:.|..|..|.||.  |:.:      .|.||:.||.|
 Frog  1088 NGFPGSPGSKGNPGNPGLPGLPGISGPKGDPGLPGFPGSPGSPGLKGV------DGPTGNSGLPG 1146

  Fly  1198 ERGEQGDMGPIGFIGPPGAKGERGDIGYAGQLGFDGAEGLKGFQGDQGPRGPPGITLPAEKGDEG 1262
            ..|.:|:.|..|..|.||.||:.|..|..|..|..|..||.|| |..|..|.||  ...:|||.|
 Frog  1147 SPGLRGESGRPGPQGTPGEKGQPGQDGIPGPSGLKGEPGLPGF-GSPGLPGLPG--SQGQKGDAG 1208

  Fly  1263 VAGLDGRAGRPGHFGQKGAPGPPGENGPNGAIGHRGPQIQGP---PGPQGDVGFPGAPGHNGRHG 1324
            ::|..|..|.||..|.:|.||.||..||.|..|..||:.:||   |||.|..|.||..|:.|..|
 Frog  1209 LSGSPGNPGLPGFKGDQGFPGSPGPQGPTGQPGLPGPRTEGPKGDPGPVGPPGRPGPQGYPGPPG 1273

  Fly  1325 LIGPKGELGDMGRQGERGESGY----AIVGRQGDIGDIGFQGE---PGWDGAKGEQGYPGLPGKN 1382
            ..||:|..||.|.:||:|..|:    .:.|.:|:.|..||.|:   ||.:|.||:||.||:|   
 Frog  1274 SEGPRGPPGDGGFKGEKGNPGFPGQPGLTGSKGEHGASGFPGDPGRPGLNGMKGDQGVPGVP--- 1335

  Fly  1383 GRVGAPGPRGPTGDAGWGGIDGMDGLVGPKGQPGVTYSYSMARPGDRGE-------PGLDGFQGE 1440
               |.||.:||.|..|..|:.|..||.|..|.||:        ||.:||       |||.|..|.
 Frog  1336 ---GFPGMKGPGGPPGLAGLKGESGLPGAIGLPGL--------PGPKGEYREIKGAPGLPGPPGR 1389

  Fly  1441 EGDGGAPGLIGFQGQRGAVGYRGDQGEVGYTGADGPQGQRGDKGYMGLTGAPGLRGLPGP---QG 1502
            .|..|.||..|..|..|::|..||.|..|..|.:|..|::||:|..|..|:.|:.|.|||   ||
 Frog  1390 PGVNGPPGPPGSPGLPGSLGLPGDTGRDGLPGFEGQLGRKGDRGLPGQPGSRGINGPPGPDGLQG 1454

  Fly  1503 EPAPAPPAPKSRGFIFARHSQSVHVPQCPANTNLLWEGYSL---SGNVAASRAVGQDLGQSGSCM 1564
            .|.|......:.||:..|||||...|.||..|..:::||||   .||   .||.|||||.:|||:
 Frog  1455 PPGPPGLGSVAHGFLITRHSQSTDAPGCPFGTTRIYDGYSLLYVQGN---ERAHGQDLGTAGSCL 1516

  Fly  1565 MRFTTMPYMLCDITNVCHFAQNNDDSLWLSTAEPMPMTMTPIQGRDLMKYISRCVVCETTTRIIA 1629
            .||:|||:|.|:|.|||:||..||.|.||||.|||||:|.|::|||:..:||||.|||....:||
 Frog  1517 RRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMEPLRGRDIQPFISRCAVCEAPAMVIA 1581

  Fly  1630 LHSQSMSIPDCPGGWEEMWTGYSYFMSTLDNVGGVGQNLVSPGSCLEEFRAQPVIECHGHGRCNY 1694
            :|||::.||.||.||..:|.|||:.|.|.....|.||.|.||||||||||:.|.|||||.|.|||
 Frog  1582 VHSQTIQIPQCPQGWSSLWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNY 1646

  Fly  1695 YDALASFWLTVIEEQDQFVQPRQQTLKA-DFTSKISRCTVCRRR 1737
            |....||||..:|..:.|.:|:.:|||| |..:::|||.||.:|
 Frog  1647 YANSYSFWLATVEMSEMFSKPQSETLKAGDLRTRVSRCQVCMKR 1690

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vkgNP_001260071.1 Collagen 60..119 CDD:189968 29/61 (48%)
Collagen 102..152 CDD:189968 26/52 (50%)
Collagen 277..334 CDD:189968 28/56 (50%)
Collagen 534..593 CDD:189968 26/58 (45%)
Collagen 814..871 CDD:189968 27/56 (48%)
Collagen 957..1014 CDD:189968 27/56 (48%)
Collagen 990..1049 CDD:189968 28/63 (44%)
Collagen 1070..1128 CDD:189968 28/65 (43%)
C4 1515..1624 CDD:128421 64/111 (58%)
C4 1625..1737 CDD:128421 59/112 (53%)
col4a5XP_004916922.2 Collagen 704..749 CDD:396114 20/44 (45%)
Collagen 751..801 CDD:396114 24/52 (46%)
Med15 899..>1240 CDD:312941 146/351 (42%)
Collagen 1092..1148 CDD:396114 22/61 (36%)
Collagen 1122..1177 CDD:396114 22/60 (37%)
C4 1468..1574 CDD:396133 61/108 (56%)
C4 1578..1688 CDD:396133 58/109 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 135 1.000 Domainoid score I4934
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D41315at33208
OrthoFinder 1 1.000 - - FOG0000443
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24023
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.110

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