Sequence 1: | NP_001260071.1 | Gene: | vkg / 33726 | FlyBaseID: | FBgn0016075 | Length: | 1940 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_031758203.1 | Gene: | col19a1 / 100488633 | XenbaseID: | XB-GENE-6050958 | Length: | 1128 | Species: | Xenopus tropicalis |
Alignment Length: | 1156 | Identity: | 409/1156 - (35%) |
---|---|---|---|
Similarity: | 482/1156 - (41%) | Gaps: | 384/1156 - (33%) |
- Green bases have known domain annotations that are detailed below.
Fly 38 CDCKGIKGRMGAPGPIGVPGLE---------GPAGDIGPPGRAGPLGEKGDVGEYGEQGEKGHRG 93
Fly 94 DIGPKGEMGYPGIMGKSGEPGTPGPRGIDGCDGRPGMQGPSGAPGQNGVRGPPGKPGQQGPPGEA 158
Fly 159 ----GEGGINSKGTKGNRGETGQPGGVGPPGFDGDRGSKGDTGYAGLTGEKGDPGLPGPKGDTGA 219
Fly 220 VSELPYSLIGPPGAKGEPGDSLSGVLKPDDTLKGYKGYVGLQGDEGPQGPTGEQGAVGRNGLPGA 284
Fly 285 RGEIGGPGERGKPGKDGEPGRFGDKGMKGAPGWTGADGLDGSPGERGEDGFTGMPGVQGGAGPPG 349
Fly 350 IYDPSLTKSLPGPIGSQGDIGPPGEQGPPGLPGKPGRRGPIGLAGQSGDPGLNGSRGPPGRSERG 414
Fly 415 EAGDYGFIGPPGPQ---GPPGEAGLPGRYGLHGEPGQNVVGPKGEPGLNGQPGLEGYRGDRGEVG 476
Fly 477 LPGDKGLPGEGYNIVGPPGS--QGPPGFRGLPGDDGYNGLRGLPGEKGLRGDDCPVCNAGPRGPR 539
Fly 540 GQEGDTGYPGSHGNRGAIGLTGPRGVQGLQGNPGRAGHKGLPGPAGIPGEPGKVGAAGPDGKAIE 604
Fly 605 VGSLRKGEIGDTGDSGHRGDTGDDGEKGRDGSDGSKGERGETGQRGDYGDAGYQGRDGEPGRDGR 669
Fly 670 DGAPGRNATTPKVYLIGEPGYDGIKGERGDDGDTGFKGVKGEPNPGQIYDNTGEPGEDGYTGPKG 734
Fly 735 VKGAKGEQGAIGLRGEIGDRGPAGEVIPGPVGAKGYPGPTGDYGQQGAPGLPGRDGEPGLDGGIG 799
Fly 800 YKGQRGVPGQEVIQGEIGPPGRSGIKGFPGDVGAPGQYGLAGRPGPKGVKGEQGPDGAVGQ---- 860
Fly 861 --TGLPGNKGQRGDFLVGPPGPKGQPGRNGRQAPHGAKGQKGEVGSLGQNGQNGAKGSIGFSGRR 923
Fly 924 GLLGNAGLQGLPGSPGIPGLPGMIGEIGERGEIGYNGRQGDIGPRGPNGEFGPKGLSGDDGPDGY 988
Fly 989 PGANGLPGRKGETGNPGFPGRPG---------------------------------AKGVAAYSG 1020
Fly 1021 IKGDDGESGLTGPIGYPGAPGAKGQRGPVGDSQPALDGVAGRKGEVGSPGPNGLPGRHGLKGQRG 1085
Fly 1086 DRGLPGQQGRPGEPGAKGLGGYPGRNGINGLKGATGFPGPQGPKGPQGESG 1136 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
vkg | NP_001260071.1 | Collagen | 60..119 | CDD:189968 | 30/58 (52%) |
Collagen | 102..152 | CDD:189968 | 21/49 (43%) | ||
Collagen | 277..334 | CDD:189968 | 20/56 (36%) | ||
Collagen | 534..593 | CDD:189968 | 15/58 (26%) | ||
Collagen | 814..871 | CDD:189968 | 24/62 (39%) | ||
Collagen | 957..1014 | CDD:189968 | 28/89 (31%) | ||
Collagen | 990..1049 | CDD:189968 | 23/91 (25%) | ||
Collagen | 1070..1128 | CDD:189968 | 25/57 (44%) | ||
C4 | 1515..1624 | CDD:128421 | |||
C4 | 1625..1737 | CDD:128421 | |||
col19a1 | XP_031758203.1 | LamG | 50..231 | CDD:419873 | |
Collagen | 343..396 | CDD:396114 | 31/64 (48%) | ||
Med15 | 460..>779 | CDD:312941 | 172/519 (33%) | ||
Collagen | 490..544 | CDD:396114 | 28/83 (34%) | ||
Collagen | 566..610 | CDD:396114 | 29/65 (45%) | ||
Collagen | 709..763 | CDD:396114 | 29/64 (45%) | ||
Collagen | 848..914 | CDD:396114 | 33/73 (45%) | ||
Collagen | 896..951 | CDD:396114 | 27/60 (45%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |