DRSC/TRiP Functional Genomics Resources

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Protein Alignment vkg and col19a1

DIOPT Version :9

Sequence 1:NP_001260071.1 Gene:vkg / 33726 FlyBaseID:FBgn0016075 Length:1940 Species:Drosophila melanogaster
Sequence 2:XP_031758203.1 Gene:col19a1 / 100488633 XenbaseID:XB-GENE-6050958 Length:1128 Species:Xenopus tropicalis


Alignment Length:1156 Identity:409/1156 - (35%)
Similarity:482/1156 - (41%) Gaps:384/1156 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 CDCKGIKGRMGAPGPIGVPGLE---------GPAGDIGPPGRAGPLGEKGDVGEYGEQGEKGHRG 93
            |.|...||..|.||..|:||.:         |..||||.||:.|..||:|..|..|.:||.||.|
 Frog   279 CPCLPYKGDPGLPGVAGLPGQKGEKGLQGENGTKGDIGIPGQIGEKGEEGTSGSTGLKGEPGHNG 343

  Fly    94 DIGPKGEMGYPGIMGKSGEPGTPGPRGIDGCDGRPGMQGPSGAPGQNGVRGPPGKPGQQGPPGEA 158
            ..|.|||||..|..|:.|..|.||.   ||.|||||:|||.         ||.|:.|:.||||.|
 Frog   344 SKGEKGEMGEKGNQGEIGPFGLPGN---DGSDGRPGIQGPI---------GPKGEKGEVGPPGPA 396

  Fly   159 ----GEGGINSKGTKGNRGETGQPGGVGPPGFDGDRGSKGDTGYAGLTGEKGDPGLPGPKGDTGA 219
                ..|||        :|:.|..|..||||.:|.||.:         |:.|.||.|||      
 Frog   397 VLPIVAGGI--------KGDKGPEGPQGPPGNEGQRGRR---------GKPGPPGNPGP------ 438

  Fly   220 VSELPYSLIGPPGAKGEPGDSLSGVLKPDDTLKGYKGYVGLQGDEGPQGPTGEQGAVGRNGLPGA 284
                    :||||..||                           .||.|..|::|.||:.||||.
 Frog   439 --------LGPPGVPGE---------------------------SGPSGKKGDKGDVGQRGLPGL 468

  Fly   285 RGEIGGPGERGKPGKDGEPGRFGDKGMKGAPGWTGADGLDGSPGERGEDGFTGMPGVQGGAGPPG 349
            .|.:|...:    |:.||||...:||.:|..|.||..||         .|.||:||:||..|.||
 Frog   469 PGLVGSVSK----GEKGEPGGTDNKGEQGVKGETGNPGL---------PGMTGLPGIQGQKGEPG 520

  Fly   350 IYDPSLTKSLPGPIGSQGDIGPPGEQGPPGLPGKPGRRGPIGLAGQSGDPGLNGSRGPPGRSERG 414
            .                  ||.|||.|..|..|.||::   |:.|..|:||  |..||       
 Frog   521 A------------------IGQPGEMGLRGEHGIPGKQ---GVKGDKGEPG--GVEGP------- 555

  Fly   415 EAGDYGFIGPPGPQ---GPPGEAGLPGRYGLHGEPGQNVVGPKGEPGLNGQPGLEGYRGDRGEVG 476
                   ||||||:   |||| |||                 :||||.:|..|..|.||.:||.|
 Frog   556 -------IGPPGPKGDTGPPG-AGL-----------------QGEPGPSGTSGAPGPRGPKGERG 595

  Fly   477 LPGDKGLPGEGYNIVGPPGS--QGPPGFRGLPGDDGYNGLRGLPGEKGLRGDDCPVCNAGPRGPR 539
            |||.:|||||    .||||:  :||.|.||.||:.|..|.|||||..||                
 Frog   596 LPGVQGLPGE----AGPPGTGVEGPQGPRGPPGEPGIQGPRGLPGVPGL---------------- 640

  Fly   540 GQEGDTGYPGSHGNRGAIGLTGPRGVQGLQGNPGRAGHKGLPGPAGIPGEPGKVGAAGPDGKAIE 604
                    ||:                  :|.|||.|..|||||   ||:|..:...|      :
 Frog   641 --------PGA------------------EGVPGRDGRPGLPGP---PGDPIALPLLG------D 670

  Fly   605 VGSLRKGEIGDTGDSGHRGDTGDDGEKGRDGSDGSKGERGETGQRGDYGDAGYQGRDGEPGRDGR 669
            :|::.|.....                                                      
 Frog   671 IGAVLKNVCSH------------------------------------------------------ 681

  Fly   670 DGAPGRNATTPKVYLIGEPGYDGIKGERGDDGDTGFKGVKGEPNPGQIYDNTGEPGEDGYTGPKG 734
              .|           ||.||..|||||:||:|..|..||||:|.|         .|..|..|.:|
 Frog   682 --CP-----------IGGPGNTGIKGEKGDEGIIGQHGVKGDPGP---------RGPSGVPGKEG 724

  Fly   735 VKGAKGEQGAIGLRGEIGDRGPAGEVIPGPVGAKGYPGPTGDYGQQGAPGLPGRDGEPGLDGGIG 799
            .||.|||:|..||.||.||:|..|  |||..|..|.|||:|..|:.|.||..|..||.|.:|..|
 Frog   725 PKGIKGERGFPGLSGEKGDQGMQG--IPGLPGLIGPPGPSGHLGRPGHPGPAGSKGEKGNEGSPG 787

  Fly   800 YKGQRGVPGQEVIQGEIGPPGRSGIKGFPGDVGAPGQYGLAGRPGPKGVKGEQGPDGAVGQ---- 860
            ..|..|.||       |..|.|:|:.......||.....: |.|||.|.||:|||.|..|.    
 Frog   788 VPGPPGPPG-------IPVPERNGMGSLYKIQGAASAVYM-GPPGPPGPKGDQGPMGEAGPMGLP 844

  Fly   861 --TGLPGNKGQRGDFLVGPPGPKGQPGRNGRQAPHGAKGQKGEVGSLGQNGQNGAKGSIGFSGRR 923
              .||||.||:||.  :||||..|.|||||...|.|..|:.||.|.:|..|..|.:|..|..|:.
 Frog   845 GLEGLPGEKGERGQ--IGPPGIAGIPGRNGAPGPPGYPGESGERGPVGDIGFPGPEGPAGVPGKN 907

  Fly   924 GLLGNAGLQGLPGSPGIPGLPGMIGEIGERGEIGYNGRQGDIGPRGPNGEFGPKGLSGDDGPDGY 988
                  |..|||||.|.||.||..|..||||:.|..|.||..|.||..|..|.||..|..||.|.
 Frog   908 ------GNDGLPGSVGAPGRPGDRGPKGERGDPGIPGDQGPQGERGKPGPSGYKGDMGTVGPQGP 966

  Fly   989 PGANGLPGRKGETGNPGFPGRPG---------------------------------AKGVAAYSG 1020
            ||..|..|..|:.|.||.|||||                                 .|..||...
 Frog   967 PGDRGYQGHPGKDGQPGPPGRPGISTENILFEEMKKYIKQEVLRIFEERMAELLSQLKSPAALLA 1031

  Fly  1021 IKGDDGESGLTGPIGYPGAPGAKGQRGPVGDSQPALDGVAGRKGEVGSPGPNGLPGRHGLKGQRG 1085
            .:|.          |.||.||..|..||.||                 |||   ||:.||:||:|
 Frog  1032 AQGH----------GKPGPPGNDGLPGPPGD-----------------PGP---PGQQGLRGQKG 1066

  Fly  1086 DRGLPGQQGRPGEPGAKGLGGYPGRNGINGLKGATGFPGPQGPKGPQGESG 1136
            :|         ||.|. ||.|.||..|..|:.|:.|.|||.||.||.|..|
 Frog  1067 ER---------GEFGI-GLPGSPGPAGPTGMPGSPGTPGPSGPSGPPGIGG 1107

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vkgNP_001260071.1 Collagen 60..119 CDD:189968 30/58 (52%)
Collagen 102..152 CDD:189968 21/49 (43%)
Collagen 277..334 CDD:189968 20/56 (36%)
Collagen 534..593 CDD:189968 15/58 (26%)
Collagen 814..871 CDD:189968 24/62 (39%)
Collagen 957..1014 CDD:189968 28/89 (31%)
Collagen 990..1049 CDD:189968 23/91 (25%)
Collagen 1070..1128 CDD:189968 25/57 (44%)
C4 1515..1624 CDD:128421
C4 1625..1737 CDD:128421
col19a1XP_031758203.1 LamG 50..231 CDD:419873
Collagen 343..396 CDD:396114 31/64 (48%)
Med15 460..>779 CDD:312941 172/519 (33%)
Collagen 490..544 CDD:396114 28/83 (34%)
Collagen 566..610 CDD:396114 29/65 (45%)
Collagen 709..763 CDD:396114 29/64 (45%)
Collagen 848..914 CDD:396114 33/73 (45%)
Collagen 896..951 CDD:396114 27/60 (45%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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