Sequence 1: | NP_001260071.1 | Gene: | vkg / 33726 | FlyBaseID: | FBgn0016075 | Length: | 1940 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_031747076.1 | Gene: | col11a2 / 100488265 | -ID: | - | Length: | 1872 | Species: | Xenopus tropicalis |
Alignment Length: | 1641 | Identity: | 585/1641 - (35%) |
---|---|---|---|
Similarity: | 727/1641 - (44%) | Gaps: | 394/1641 - (24%) |
- Green bases have known domain annotations that are detailed below.
Fly 82 EYGEQGEKGHRGDIGPKGEMGYPGIMGKSGEPG--TPGPRGIDGCDG-----RPGM--QGPSGAP 137
Fly 138 GQNGVRGPPGKPGQQGPPGEAGEGGINSKGTKGNRGETGQPGGVGPPGFDGDRGSKGDTGYAGLT 202
Fly 203 GEKGDPGLPGPKGDTGAVSELPYSLIGPPGAKG----EPGDSLSGVLKPDDTLKGYKGYVGLQGD 263
Fly 264 EGPQGPTGEQGAVGRNGLPGARGEIG--GP-GERGKPGKDGEPGRFGDKGMKGAPGWTGADGLDG 325
Fly 326 SPGERGEDGFTGMPGVQGGAGPPGIYDPSLTKSLPGPIGSQGDIGPPGEQGPPGLPGKPGRRGPI 390
Fly 391 GLAGQSGDPGLNGSRGPPG-RSERGEAGDYGFIGPPGPQGPPGEAGLPGRYGLHGEPGQNVVGPK 454
Fly 455 GEPGLNGQPGLEGYRGDRGEVGLPGDKGLPGEGYNIVGPPGSQGPPGFRGLPGDDGYNGLRGLPG 519
Fly 520 EKGLRGDDCPVCNAGPRGPRGQEGDTGYPGSHGNRGAIGLTGPRGVQGLQGNPGRAGHKGLPGPA 584
Fly 585 GIPGEPGKVGAAGPDGKAIEVGSLRKGEIGDTGDSGHRGDTGDDGEKGRDGSDGSKGERGETGQR 649
Fly 650 GDYGDAGYQGRDGEPGRDGRDGAPGRNATTPKVYLIGEPGYDGIKGERGDDGDTGFKGVKGEPNP 714
Fly 715 GQIYDNTGEPGEDGYTGPKGVKGAKGEQGAIGLRGEIGDRGPAGEVIPGPVGAKGYPGPTGDYGQ 779
Fly 780 QGAPGLPGRDGEPGLDGGIGYKGQRGVPGQEVIQGEIGPPGRSGIKGFPGDVGAPGQYGLAGRPG 844
Fly 845 PKGVKGEQGPDGAVGQTGLPGNKGQRGDFLVGPPGPKGQPGRNGRQAPHGAKGQKGEVGSLGQNG 909
Fly 910 QNGAKGSIGFSGRRGLLGNAGLQGLPGSPGIPGLPGMIGEIGERGEIGYNGRQGDIGPRGPNGEF 974
Fly 975 GPKGLSGDDGPDGYP---GANGLPGRKGETGNPGFPGRPGAKGVAAYSGIKGDDGESGLTGPIGY 1036
Fly 1037 PGAPGAKGQRGPVG----DSQPALDGVAGRKGEVGSPGPNGLP---GRHGLKGQRGDRGLPGQQG 1094
Fly 1095 RPGEPGAKGLGGYPGRNGINGLKGATGFPGPQGPKGPQGESGVVGLDGRNGQIGDQGPRGLIGEQ 1159
Fly 1160 GEQGEQGDEGEVGIPGRLENLRDRSFYRGFTGDQGLQGERGEQGDMGPIGFIGPPGAKGERGDIG 1224
Fly 1225 YAGQLGFDGAEGLKGFQGDQGPRGPPGITLPAEKGDEGVAGLDGRAGRPGHFGQKGAPGPPGENG 1289
Fly 1290 PNGAIGHRGPQIQGPPGPQGDVGFPGAPGHNGRHGLIGPKGELGDMGRQGERGESGYAIVGRQGD 1354
Fly 1355 IGDIGFQGEPGWDGAKGEQGYPGLPGKNGRVGAPGPRGPTGDAGWGGIDGMDGLVGPKGQPGVTY 1419
Fly 1420 SYSMARPGDRGEPGLDGFQGEEGDGGAPGLIGFQGQRGAVGYRGDQGEVGYTGADGPQGQRGDKG 1484
Fly 1485 YMGLTGAPGLRGLPGPQGEPAPAPPAPKSRGFIFARHSQSVHVPQCPAN------TNLLWEGYSL 1543
Fly 1544 SGNVAASRAVGQDLGQSGSCMMRFTTM-----PYMLCDITNVCHFAQNNDDSLWLSTAEPMPMTM 1603
Fly 1604 TPIQG--RDLMKYISRCVVCETTTRIIALHSQSMSIPDCP------GGW--EEMWTGYSYF---- 1654
Fly 1655 -MSTLDNVG---GVGQ 1666 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
vkg | NP_001260071.1 | Collagen | 60..119 | CDD:189968 | 9/38 (24%) |
Collagen | 102..152 | CDD:189968 | 24/58 (41%) | ||
Collagen | 277..334 | CDD:189968 | 27/59 (46%) | ||
Collagen | 534..593 | CDD:189968 | 24/58 (41%) | ||
Collagen | 814..871 | CDD:189968 | 24/56 (43%) | ||
Collagen | 957..1014 | CDD:189968 | 27/59 (46%) | ||
Collagen | 990..1049 | CDD:189968 | 27/58 (47%) | ||
Collagen | 1070..1128 | CDD:189968 | 29/60 (48%) | ||
C4 | 1515..1624 | CDD:128421 | 26/121 (21%) | ||
C4 | 1625..1737 | CDD:128421 | 13/58 (22%) | ||
col11a2 | XP_031747076.1 | TSPN | 40..230 | CDD:214560 | |
Collagen | 632..686 | CDD:396114 | 23/53 (43%) | ||
Collagen | 665..719 | CDD:396114 | 28/62 (45%) | ||
Collagen | 785..839 | CDD:396114 | 24/54 (44%) | ||
Collagen | 839..894 | CDD:396114 | 25/66 (38%) | ||
Collagen | 878..933 | CDD:396114 | 24/59 (41%) | ||
Collagen | 926..981 | CDD:396114 | 22/54 (41%) | ||
PHA03169 | 1318..>1475 | CDD:223003 | 79/216 (37%) | ||
COLFI | 1642..1870 | CDD:396131 | 36/154 (23%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 284 | 1.000 | Domainoid score | I1599 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 1.000 |