DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vkg and col11a2

DIOPT Version :9

Sequence 1:NP_001260071.1 Gene:vkg / 33726 FlyBaseID:FBgn0016075 Length:1940 Species:Drosophila melanogaster
Sequence 2:XP_031747076.1 Gene:col11a2 / 100488265 -ID:- Length:1872 Species:Xenopus tropicalis


Alignment Length:1641 Identity:585/1641 - (35%)
Similarity:727/1641 - (44%) Gaps:394/1641 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 EYGEQGEKGHRGDIGPKGEMGYPGIMGKSGEPG--TPGPRGIDGCDG-----RPGM--QGPSGAP 137
            :|.|..|..|.|          |.:..::.|.|  ..|||||.|..|     .|||  :||.||.
 Frog   459 DYTEGSETTHLG----------PVLSAETPESGGAFSGPRGIKGDKGEPAVMEPGMLVEGPPGAE 513

  Fly   138 GQNGVRGPPGKPGQQGPPGEAGEGGINSKGTKGNRGETGQPGGVGPPGFDGDRGSKGDTGYAGLT 202
            |..|:.||||:.|..||                    .|.||..|||            |.|||.
 Frog   514 GPAGLPGPPGRHGHPGP--------------------VGDPGERGPP------------GRAGLP 546

  Fly   203 GEKGDPGLPGPKGDTGAVSELPYSLIGPPGAKG----EPGDSLSGVLKPDDTLKGYKGYVGLQGD 263
            |..|.||.|      |:...||:.|....||||    ........:|:        :..:.|:|.
 Frog   547 GANGLPGQP------GSSVMLPFRLGNSAGAKGPIVAAQEAQAQAILQ--------QARLALRGP 597

  Fly   264 EGPQGPTGEQGAVGRNGLPGARGEIG--GP-GERGKPGKDGEPGRFGDKGMKGAPGWTGADGLDG 325
            .||.|.||..|.:|..|.||.:||.|  || |:||..|..|.||:.|.:|..||.|..|..|..|
 Frog   598 SGPMGYTGRSGPLGPPGSPGLKGESGDVGPQGQRGPQGLAGPPGKAGRRGRSGADGARGLPGEFG 662

  Fly   326 SPGERGEDGFTGMPGVQGGAGPPGIYDPSLTKSLPGPIGSQGDIGPPGEQGPPGLPGKPGRRGPI 390
            ..|:||.||..|:||.:|..|..|:..|     |.|| |..|:.|..||.|..||||:||.|   
 Frog   663 LKGDRGFDGLPGLPGEKGNRGDSGVQGP-----LGGP-GEDGERGADGEVGARGLPGEPGVR--- 718

  Fly   391 GLAGQSGDPGLNGSRGPPG-RSERGEAGDYGFIGPPGPQGPPGEAGLPGRYGLHGEPGQNVVGPK 454
            ||.|..|.||:   .|||| |...|..|..|.:||.|..||||:.|.||..||.|..|.  |||.
 Frog   719 GLLGPKGPPGI---PGPPGVRGMDGHVGPKGNLGPQGEPGPPGQQGTPGTQGLSGPQGP--VGPP 778

  Fly   455 GEPGLNGQPGLEGYRGDRGEVGLPGDKGLPGEGYNIVGPPGSQGPPGFRGLPGDDGYNGLRGLPG 519
            ||.|.:|:|||.|..|..|..|.||.:|..|...|: ||.|.|||.|:.|..|..|.:|:|||.|
 Frog   779 GEKGPHGKPGLPGIPGSDGPPGHPGKEGPAGTKGNL-GPTGPQGPIGYPGPRGGKGIDGIRGLKG 842

  Fly   520 EKGLRGDDCPVCNAGPRGPRGQEGDTGYPGSHGNRGAIGLTGPRGVQGLQGNPGRAGHKGLPGPA 584
            .||.:|:|         |..|.:||.|.   .|::|..|:.|.||..|.:|..||:|..|.|||.
 Frog   843 HKGEKGED---------GFPGFKGDVGI---KGDKGEGGVPGSRGEDGPEGPKGRSGPNGDPGPI 895

  Fly   585 GIPGEPGKVGAAGPDGKAIEVGSLRKGEIGDTGDSGHRGDTGDDGEKGRDGSDGSKGERGETGQR 649
            |:.||.||:|..|..|..   |  |:|..|..|..|..|..|:.|.:|..|..|.:||||.:|.|
 Frog   896 GVIGEKGKLGVPGLPGYP---G--RQGAKGSLGFPGFPGANGEKGARGLSGKSGPRGERGPSGPR 955

  Fly   650 GDYGDAGYQGRDGEPGRDGRDGAPGRNATTPKVYLIGEPGYDGIKGERGDDGDTGFKGVKGEPNP 714
            |..|..|..|:.|..|..|.||..|.         :||      :|..|..|..||.|.||.|.|
 Frog   956 GQRGPRGATGKSGPKGTSGGDGPSGP---------LGE------RGLPGPQGSNGFPGPKGPPGP 1005

  Fly   715 GQIYDNTGEPGEDGYTGPKGVKGAKGEQGAIGLRGEIGDRGPAGEVIPGPVGAKGYPGPTGDYGQ 779
                     ||:|      |:.|..|::|.:|.:|::|..||     ||.||::|..|.:|..|:
 Frog  1006 ---------PGKD------GIPGHPGQRGEVGFQGKMGTTGP-----PGVVGSQGTQGESGPMGE 1050

  Fly   780 QGAPGLPGRDGEPGLDGGIGYKGQRGVPGQEVIQGEIGPPGRSGIKGFPGDVGAPGQYGLAGRPG 844
            :|.||.||..||.||.|..|.:|.:|.||...:.|:.||   :|::||||:.|.|      |.||
 Frog  1051 RGHPGPPGPPGEQGLSGPSGKEGTKGDPGPTGVGGKDGP---AGLRGFPGERGLP------GTPG 1106

  Fly   845 PKGVKGEQGPDGAVGQTGLPGNKGQRGDFLVGPPGPKGQPGRNGRQAPHGAKGQKGEVGSLGQNG 909
            ..|:||.:||.|..|..|.||.:|..|.     .||.|.|||.|.|.|.||.|:||..|.     
 Frog  1107 GPGLKGNEGPAGPPGPAGSPGERGGPGQ-----GGPIGPPGRPGPQGPAGAAGEKGVPGE----- 1161

  Fly   910 QNGAKGSIGFSGRRGLLGNAGLQGLPGSPGIPGLPGMIGEIGERGEIGYNGRQGDIGPRGPNGEF 974
                ||.||.:||.|:.|..||.|..|.|||.|..|..||:||.|:.|..|.:|:.||.||:|..
 Frog  1162 ----KGPIGPAGRDGVQGPVGLPGPAGPPGISGEDGDKGEVGEHGQKGAKGNKGEHGPPGPSGPI 1222

  Fly   975 GPKGLSGDDGPDGYP---GANGLPGRKGETGNPGFPGRPGAKGVAAYSGIKGDDGESGLTGPIGY 1036
            |..|..|..|.||.|   |..|:.|.||:.|..||||.||..|:....|..|:.||:|..||:|.
 Frog  1223 GSVGQPGAAGADGEPGPRGQQGVFGAKGDEGTRGFPGAPGPIGLQGLPGPYGEKGETGDGGPMGP 1287

  Fly  1037 PGAPGAKGQRGPVG----DSQPALDGVAGRKGEVGSPGPNGLP---GRHGLKGQRGDRGLPGQQG 1094
            ||.||.:|..||.|    ...|...|..|.:||.|.||..|:|   |..|.||.|||||..|:.|
 Frog  1288 PGPPGPRGPAGPSGADGPQGPPGGIGNLGPQGEKGEPGETGVPGIKGEFGPKGPRGDRGEKGESG 1352

  Fly  1095 RPGEPGAKGLGGYPGRNGINGLKGATGFPGPQGPKGPQGESGVVGLDGRNGQIGDQGPRGLIGEQ 1159
            :||:||.:|:.|.||.:|..|..|..||||..||.                  |:.||||..|.:
 Frog  1353 QPGDPGPQGVKGPPGDDGPKGNPGPVGFPGDPGPP------------------GEMGPRGQDGAK 1399

  Fly  1160 GEQGEQGDEGEVGIPGRLENLRDRSFYRGFTGDQGLQGERGEQGDMGPIGFIGPPGAKGERGDIG 1224
            |::||.|::||.|.|                               ||.|..||||..|:||.  
 Frog  1400 GDRGEDGEQGEAGSP-------------------------------GPTGENGPPGPVGKRGP-- 1431

  Fly  1225 YAGQLGFDGAEGLKGFQGDQGPRGPPGITLPAEKGDEGVAGLDGRAGRPGHFGQKGAPGPPGENG 1289
             ||..|.:|.:|.||.:|:.|..||||.|        |..|..|.||:.|..|.:|.||..||.|
 Frog  1432 -AGPSGPEGRQGEKGSKGEPGALGPPGKT--------GAVGPQGTAGKQGPEGLRGLPGAVGEQG 1487

  Fly  1290 PNGAIGHRGPQIQGPPGPQGDVGFPGAPGHNGRHGLIGPKGELGDMGRQGERGESGYAIVGRQGD 1354
            ..||.|.     .|||||.|..|.||..|..                                  
 Frog  1488 RPGATGQ-----AGPPGPMGPSGLPGLKGDT---------------------------------- 1513

  Fly  1355 IGDIGFQGEPGWDGAKGEQGYPGLPGKNGRVGAPGPRGPTGDAGWGGIDGMDGLVGPKGQPGVTY 1419
                         |||||:|:|||                           .||:||.|:.|   
 Frog  1514 -------------GAKGEKGHPGL---------------------------IGLIGPTGEQG--- 1535

  Fly  1420 SYSMARPGDRGEPGLDGFQGEEGDGGAPGLIGFQGQRGAVGYRGDQGEVGYTGADGPQGQRGDKG 1484
                 ..||||.||..|..|::|:.|.||:.|..|..|..|..|.||.   .||.|..||.|.||
 Frog  1536 -----EKGDRGLPGPHGSGGQKGETGIPGVTGPIGPGGPAGSPGPQGP---KGAKGATGQAGPKG 1592

  Fly  1485 YMGLTGAPGLRGLPGPQGEPAPAPPAPKSRGFIFARHSQSVHVPQCPAN------TNLLWEGYSL 1543
            ..|:.|.||..|.||...:|.|.....||:        :|:...|..|:      |:.:.|.|  
 Frog  1593 QKGVQGPPGPPGPPGEVIQPLPFQMPKKSK--------RSIDASQIMADEPAADYTDGMEEIY-- 1647

  Fly  1544 SGNVAASRAVGQDLGQSGSCMMRFTTM-----PYMLCDITNVCHFAQNNDDSLWLSTAEPMPMTM 1603
                .:..|:.:|:.     :|| |.|     |...|....:|| .:..|...|:.         
 Frog  1648 ----GSLNAIKKDIE-----LMR-TPMGTKEHPARTCQDLKLCH-PELPDGEYWID--------- 1692

  Fly  1604 TPIQG--RDLMKYISRCVVCETTTRIIALHSQSMSIPDCP------GGW--EEMWTGYSYF---- 1654
             |.||  ||..|     |.|..|.      .:|...|...      ..|  |:..|.||.:    
 Frog  1693 -PNQGCTRDSFK-----VFCNFTA------GESCIFPSKDIEKVKMSSWSSEKRETWYSQYRSGR 1745

  Fly  1655 -MSTLDNVG---GVGQ 1666
             .|.:|:.|   ||.|
 Frog  1746 KFSYIDSEGNAIGVVQ 1761

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vkgNP_001260071.1 Collagen 60..119 CDD:189968 9/38 (24%)
Collagen 102..152 CDD:189968 24/58 (41%)
Collagen 277..334 CDD:189968 27/59 (46%)
Collagen 534..593 CDD:189968 24/58 (41%)
Collagen 814..871 CDD:189968 24/56 (43%)
Collagen 957..1014 CDD:189968 27/59 (46%)
Collagen 990..1049 CDD:189968 27/58 (47%)
Collagen 1070..1128 CDD:189968 29/60 (48%)
C4 1515..1624 CDD:128421 26/121 (21%)
C4 1625..1737 CDD:128421 13/58 (22%)
col11a2XP_031747076.1 TSPN 40..230 CDD:214560
Collagen 632..686 CDD:396114 23/53 (43%)
Collagen 665..719 CDD:396114 28/62 (45%)
Collagen 785..839 CDD:396114 24/54 (44%)
Collagen 839..894 CDD:396114 25/66 (38%)
Collagen 878..933 CDD:396114 24/59 (41%)
Collagen 926..981 CDD:396114 22/54 (41%)
PHA03169 1318..>1475 CDD:223003 79/216 (37%)
COLFI 1642..1870 CDD:396131 36/154 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 284 1.000 Domainoid score I1599
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.