DRSC/TRiP Functional Genomics Resources

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Protein Alignment vkg and col4a2

DIOPT Version :9

Sequence 1:NP_001260071.1 Gene:vkg / 33726 FlyBaseID:FBgn0016075 Length:1940 Species:Drosophila melanogaster
Sequence 2:XP_002933063.2 Gene:col4a2 / 100486079 XenbaseID:XB-GENE-5950101 Length:1722 Species:Xenopus tropicalis


Alignment Length:1828 Identity:713/1828 - (39%)
Similarity:867/1828 - (47%) Gaps:285/1828 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 GKICNTTLCDCKGIKGRMGAPGPIGVPGLEGPAGDIGPPGRAGPLGEKGDVGEYGEQGEKGHRGD 94
            |:.|:.. |.|...||..|.|||:|..|..||.|.|   |.||..|.|||.||.|..|..|..||
 Frog    57 GRDCSQG-CQCLPEKGSRGQPGPLGGQGTSGPPGLI---GIAGLQGRKGDKGERGFPGVTGPSGD 117

  Fly    95 IGPKGEMGYPGIMGKSGEPGTPGPRGIDGCDGRPGMQGPSGAPGQNGVRGPPGKPGQQGPPGEAG 159
            .|..|..|:||..|..|..|..||||..|.||..|.||.:|..|.:|.|||||..|..|..|:.|
 Frog   118 KGQSGVTGFPGADGVPGHTGQGGPRGKPGHDGCNGTQGDAGVGGSHGSRGPPGISGGFGAKGQKG 182

  Fly   160 EGGINSKGTKGNRGETGQPGGVGPPGFDGDRGSKGDTGYAGLTGEKGDPGLPGPKGDTGAVSELP 224
            |....|...| || ..|.||..|..|..|.|||.|..|:.|..|.:|..|.|||.          
 Frog   183 EPFHVSIEVK-NR-LRGDPGEAGFNGIQGPRGSPGTAGFIGPQGYRGPRGPPGPP---------- 235

  Fly   225 YSLIGPPGAKGEPGDSLSGVLKPDDTLKGYKGYVGLQGDEGPQGPTGEQGAVGR----------- 278
                ||.|.:|..|                .||.|.:|:.|..||.|||...|.           
 Frog   236 ----GPQGPQGNRG----------------LGYYGEKGEPGDPGPPGEQPRQGEREQKHKIEILL 280

  Fly   279 ---NGLPGARGEIGGPGERGKPGKDGEPGRFGDKGMKGAPGWTGADGLDGSPGERGEDGFTGMPG 340
               .|..|.:||.|.||::|:|...||.   |::|:.|.||..|..|.||:.|..||.||.|..|
 Frog   281 LQYKGAKGDQGEKGNPGDKGQPAVTGEK---GEEGITGFPGQRGFPGNDGNSGASGEIGFPGANG 342

  Fly   341 VQGGAGPPGIYDPSLTKSLPGPIGSQGDIGPPGEQGP-PGLPGKPGRRGPIGLAGQSGDPGLNGS 404
            |.|               |||..|.:|::|..|.||| ..:.|:..|:   |..|:.|.|||||.
 Frog   343 VPG---------------LPGTKGKKGEVGDLGPQGPVTFVNGQQKRK---GYEGEIGFPGLNGV 389

  Fly   405 RGPPGRSERGEAGDYGFIGPPGPQGPPGEAGLPGRYGLHGEPGQNVVGPKGEPGLNGQPGLEGYR 469
                          ||..|.||..|.||:.|.|.|:     |||.     |:.||.||.|.:||:
 Frog   390 --------------YGDDGDPGDPGFPGQNGSPSRF-----PGQT-----GDTGLKGQRGPKGYQ 430

  Fly   470 GDRG----EVGLPGDKGLPGEGYNIVGPPGSQGPP----GFRGLPGDDGYNGLRGLPGEKGLRG- 525
            ||.|    :.|.||..|.||:    .||||..|.|    |.:||||..|.:|.||.||.:|||| 
 Frog   431 GDTGLPAFQPGPPGIDGAPGK----EGPPGQPGYPGGRIGMKGLPGFPGRDGQRGAPGSRGLRGI 491

  Fly   526 ----DDCPVCNAGP---RGPRGQEGDTGYPGSHGNRGAIGLTGPRGVQGLQGNPGRAGHKGLPGP 583
                .:|. |..|.   |||.|:.|..|:||..|:.|..|..|.||||||.|.||..   ||.||
 Frog   492 KGEQGECR-CYEGDEAGRGPAGEPGPVGFPGFQGHAGRKGEAGDRGVQGLPGAPGTV---GLAGP 552

  Fly   584 AGIPGEPGKVGAAGPDGKAIEVGSLRKGEIGDTGDSGHRGDTGDDGEKGRDGSDGSKGERGETGQ 648
            ||.||..|:        |..:|.:..||..|..||||..|..|.||..||:|.|||.|..|.:|.
 Frog   553 AGFPGPAGE--------KGDKVFATEKGSKGAQGDSGFPGVPGRDGYPGRNGRDGSPGFPGPSGD 609

  Fly   649 --RGDYGDAGYQGRDGEPGRDGRDGAPGRNATTPKVYLIGEPGYDGIKGERGDDGDTGFKGVKGE 711
              :|..|..|:.|..|..|..|..|.||.          |.||..|::||.|:.|.:||.||.|.
 Frog   610 GIKGLPGSHGFPGLPGNAGARGETGFPGP----------GFPGSKGLRGEPGNRGVSGFPGVPGL 664

  Fly   712 PNP-GQIYDNTGE----------------------------PGEDGYTGPKGVKGAKGEQGAIGL 747
            ..| |..|..|.|                            ||.:|..|.||..|..|..|..||
 Frog   665 SGPQGDCYQETDEENEIGKEGTGCRLIAPPAPAGAPGPPGLPGYNGIRGQKGFPGPHGFDGVFGL 729

  Fly   748 RGEIGDRGPAGEVIPGPVGAKGYPGPTGDYGQQGAPGLPGRDGEPGLDGGIGYKG----QRGVPG 808
            :|..||||.  :.:|||.|..|..|..|:.|..|.||:||..|:||..|..|.||    :.|.|.
 Frog   730 KGIKGDRGT--DSLPGPPGFSGQRGDRGNAGLPGLPGVPGLSGKPGFKGVQGEKGSVGDRLGAPS 792

  Fly   809 QEVIQGEIGPPGRSGIKGFPGDVGAPGQYGLAGRPGPKGVKGEQGPDGAVGQTGLPGNKGQRGDF 873
            .|  ||..|.||..|:||..||.|.||..|..|.||..|.||.:|..||.|..|:||.....|  
 Frog   793 GE--QGNTGLPGLQGLKGTQGDQGIPGLQGKVGTPGTPGNKGIKGSPGAPGVPGIPGPAALFG-- 853

  Fly   874 LVGPPGPKGQPGRNGRQAPHGAKGQKGEVGSLGQNGQNGAKGSIGFSGRRGLLGNAGLQGLPGSP 938
            ..|.||..|.||..|...|.|..||:|:.|..|..|..|.|   |..|..|:.|..|::|..|:|
 Frog   854 FPGMPGNPGTPGPQGSMGPPGPPGQRGDEGEKGPPGPAGMK---GLPGELGVGGFIGVRGRHGNP 915

  Fly   939 GIPGLPGMIGEIGERGEIGYNGRQGDIGPRGPNGEFGPKGLSGDDGPDGYP---GANGLPGRKGE 1000
            |||||.||.|..|.:|..|..|.:|..|.:|..|....:||.|..|..|:|   |.||..|.||:
 Frog   916 GIPGLVGMHGLPGVKGIKGSPGMEGFQGMKGAKGRPAWRGLKGPSGNIGFPGVKGGNGTSGTKGD 980

  Fly  1001 TGNPGFPGRP--------------GAKGVAAYSGIKGDDGESGLTGP---IGYPGAPGAK----G 1044
            .|..|.||.|              |.:||:.:.||.|..|..|:.||   :|.||.||.:    |
 Frog   981 RGEQGPPGDPPKMPEMMLLTKGETGDQGVSGFKGISGLKGSKGMPGPPGQLGLPGLPGLRSFEFG 1045

  Fly  1045 QRGPVGDSQPALDGVAGRKGEVGSPGPNGLPGRHGLKGQRGDRGLPGQQGRPGEPGAKGLGG--- 1106
            .:|..|     ..||.|.:|.:|..||:|:   .|..|..|.||.||..|.||.||.:|..|   
 Frog  1046 DKGETG-----TPGVIGNQGILGEVGPDGI---IGFPGFTGPRGTPGISGFPGVPGERGKYGDIG 1102

  Fly  1107 -------YPGRNGINGLKGATGFPGPQGPKGPQGESGVVGLDGRNGQIGDQGPRGLIGEQGEQGE 1164
                   .||..|..|..|..|.||.:|..|.:|.:|..|..|..|.||:.      |:.||:|.
 Frog  1103 ERGDTIDLPGERGTKGQGGTPGLPGQRGIHGEKGTTGDEGFRGIEGVIGEH------GQTGEKGF 1161

  Fly  1165 QGDEGEVGIPGRLENLRDRSFYRGFTGDQGLQGERGEQGDMGPIGFIGPPGAKGERGDIGYAGQL 1229
            .|.:|.||.||.          :||.|..|:.||:|..|..|..|..|.||.:|..|..|..|..
 Frog  1162 PGQQGLVGFPGS----------QGFPGLPGVPGEKGSSGFPGLPGQHGFPGIRGIAGLDGLPGTK 1216

  Fly  1230 GFDGAE-----GLKGFQGDQGPRGPPG-----ITLP---AEKGDEGVAGLDGRAGRPGHFGQKGA 1281
            |.:|..     |||||:|..|.:|.||     :.:|   ..||.||..||.|..|.||..|.:|.
 Frog  1217 GINGQPGADIIGLKGFKGLSGGKGQPGEASTIVGMPGPAGSKGAEGDQGLPGLIGLPGTVGVRGL 1281

  Fly  1282 PGPPGENGPNGAIGHRGPQIQGPPGPQGDVGFPGAPGHNGRHGLIGPKGELGDMGRQGERGESGY 1346
            ||...:.|..|.:        |||||.|..||||..|..|.....|.||.:||:|.||..|..| 
 Frog  1282 PGFSNKTGLLGDV--------GPPGPPGLPGFPGPIGRPGLPSKPGVKGVIGDLGLQGNYGAKG- 1337

  Fly  1347 AIVGRQGDIGDIGFQGEPGWDGAKGEQGYPGLPGKNGRVGAPGPRGPTGDAGWGGIDGMDGLVGP 1411
             |.|.:|.:|..|..|.||..|.||..|:.|..|.:|..|..||:|..||.|..|:.|..|..||
 Frog  1338 -IPGDEGKVGVPGLAGIPGAKGLKGSAGFQGFVGVSGYRGDQGPKGLRGDIGEYGLKGPPGQPGP 1401

  Fly  1412 KGQPGVTYSYSMARPGDRGEPGLDGFQGEEGDGGAPGLIGFQGQRGAVGYRGDQGEVGY------ 1470
            ..:|.:.    .|..|..|..|:.|.||.:||.|..||:|..|..|..|..|..|..|:      
 Frog  1402 MSEPPLI----TAEQGYPGAHGIIGHQGVQGDMGPKGLVGTPGAPGQTGKEGLPGVPGWPAPPGS 1462

  Fly  1471 TGADGPQGQRGDKGYMGLTGAPGLRGLPGPQGEPAPAPPAPKSRGFIFARHSQSVHVPQCPANTN 1535
            .|..||.|:.|..|:.|.:|.||..||||..|...       :.|::..:|||:...|.||....
 Frog  1463 RGEQGPMGRTGPNGFKGASGVPGRAGLPGMPGRSV-------NIGYLLVKHSQTDEEPMCPVGMA 1520

  Fly  1536 LLWEGYSLSGNVAASRAVGQDLGQSGSCMMRFTTMPYMLCDITNVCHFAQNNDDSLWLSTAEPMP 1600
            .||.||||.......:|..||||.:|||:.||:|||::.|:..:||::|..||.|.||||..|:|
 Frog  1521 RLWTGYSLLYFEGQEKAHNQDLGLAGSCLQRFSTMPFLYCNPGDVCYYANRNDKSYWLSTTAPLP 1585

  Fly  1601 MTMTPIQGRDLMKYISRCVVCETTTRIIALHSQSMSIPDCPGGWEEMWTGYSYFMSTLDNVGGVG 1665
              |.|:...::..|||||.|||.....||:|||.:|||.||.||..:|.|||:.|.|.....|.|
 Frog  1586 --MMPVVEEEIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPDGWRSLWIGYSFLMHTAAGDEGGG 1648

  Fly  1666 QNLVSPGSCLEEFRAQPVIECH-GHGRCNYYDALASFWLTVIEEQDQFVQPRQQTLKAD-FTSKI 1728
            |:|.|||||||:|||.|.|||: |.|.|:|:....|||||.|:|..| ..|...||||. ..:.|
 Frog  1649 QSLSSPGSCLEDFRATPFIECNGGRGTCHYFANKYSFWLTTIDEPFQ-SSPPADTLKAGLIRTHI 1712

  Fly  1729 SRCTVCRR 1736
            |||.||.:
 Frog  1713 SRCQVCMK 1720

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vkgNP_001260071.1 Collagen 60..119 CDD:189968 27/58 (47%)
Collagen 102..152 CDD:189968 25/49 (51%)
Collagen 277..334 CDD:189968 24/70 (34%)
Collagen 534..593 CDD:189968 31/61 (51%)
Collagen 814..871 CDD:189968 26/56 (46%)
Collagen 957..1014 CDD:189968 24/73 (33%)
Collagen 990..1049 CDD:189968 28/79 (35%)
Collagen 1070..1128 CDD:189968 25/67 (37%)
C4 1515..1624 CDD:128421 49/108 (45%)
C4 1625..1737 CDD:128421 59/114 (52%)
col4a2XP_002933063.2 Collagen 95..149 CDD:396114 25/53 (47%)
Collagen 509..563 CDD:396114 29/64 (45%)
Collagen 539..602 CDD:396114 33/73 (45%)
Med15 728..>1034 CDD:312941 127/314 (40%)
Collagen 1169..1224 CDD:396114 22/64 (34%)
Collagen 1434..1490 CDD:396114 20/55 (36%)
C4 1501..1605 CDD:396133 46/105 (44%)
C4 1611..1719 CDD:396133 58/108 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D41315at33208
OrthoFinder 1 1.000 - - FOG0000443
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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