Sequence 1: | NP_001260071.1 | Gene: | vkg / 33726 | FlyBaseID: | FBgn0016075 | Length: | 1940 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_002933063.2 | Gene: | col4a2 / 100486079 | XenbaseID: | XB-GENE-5950101 | Length: | 1722 | Species: | Xenopus tropicalis |
Alignment Length: | 1828 | Identity: | 713/1828 - (39%) |
---|---|---|---|
Similarity: | 867/1828 - (47%) | Gaps: | 285/1828 - (15%) |
- Green bases have known domain annotations that are detailed below.
Fly 30 GKICNTTLCDCKGIKGRMGAPGPIGVPGLEGPAGDIGPPGRAGPLGEKGDVGEYGEQGEKGHRGD 94
Fly 95 IGPKGEMGYPGIMGKSGEPGTPGPRGIDGCDGRPGMQGPSGAPGQNGVRGPPGKPGQQGPPGEAG 159
Fly 160 EGGINSKGTKGNRGETGQPGGVGPPGFDGDRGSKGDTGYAGLTGEKGDPGLPGPKGDTGAVSELP 224
Fly 225 YSLIGPPGAKGEPGDSLSGVLKPDDTLKGYKGYVGLQGDEGPQGPTGEQGAVGR----------- 278
Fly 279 ---NGLPGARGEIGGPGERGKPGKDGEPGRFGDKGMKGAPGWTGADGLDGSPGERGEDGFTGMPG 340
Fly 341 VQGGAGPPGIYDPSLTKSLPGPIGSQGDIGPPGEQGP-PGLPGKPGRRGPIGLAGQSGDPGLNGS 404
Fly 405 RGPPGRSERGEAGDYGFIGPPGPQGPPGEAGLPGRYGLHGEPGQNVVGPKGEPGLNGQPGLEGYR 469
Fly 470 GDRG----EVGLPGDKGLPGEGYNIVGPPGSQGPP----GFRGLPGDDGYNGLRGLPGEKGLRG- 525
Fly 526 ----DDCPVCNAGP---RGPRGQEGDTGYPGSHGNRGAIGLTGPRGVQGLQGNPGRAGHKGLPGP 583
Fly 584 AGIPGEPGKVGAAGPDGKAIEVGSLRKGEIGDTGDSGHRGDTGDDGEKGRDGSDGSKGERGETGQ 648
Fly 649 --RGDYGDAGYQGRDGEPGRDGRDGAPGRNATTPKVYLIGEPGYDGIKGERGDDGDTGFKGVKGE 711
Fly 712 PNP-GQIYDNTGE----------------------------PGEDGYTGPKGVKGAKGEQGAIGL 747
Fly 748 RGEIGDRGPAGEVIPGPVGAKGYPGPTGDYGQQGAPGLPGRDGEPGLDGGIGYKG----QRGVPG 808
Fly 809 QEVIQGEIGPPGRSGIKGFPGDVGAPGQYGLAGRPGPKGVKGEQGPDGAVGQTGLPGNKGQRGDF 873
Fly 874 LVGPPGPKGQPGRNGRQAPHGAKGQKGEVGSLGQNGQNGAKGSIGFSGRRGLLGNAGLQGLPGSP 938
Fly 939 GIPGLPGMIGEIGERGEIGYNGRQGDIGPRGPNGEFGPKGLSGDDGPDGYP---GANGLPGRKGE 1000
Fly 1001 TGNPGFPGRP--------------GAKGVAAYSGIKGDDGESGLTGP---IGYPGAPGAK----G 1044
Fly 1045 QRGPVGDSQPALDGVAGRKGEVGSPGPNGLPGRHGLKGQRGDRGLPGQQGRPGEPGAKGLGG--- 1106
Fly 1107 -------YPGRNGINGLKGATGFPGPQGPKGPQGESGVVGLDGRNGQIGDQGPRGLIGEQGEQGE 1164
Fly 1165 QGDEGEVGIPGRLENLRDRSFYRGFTGDQGLQGERGEQGDMGPIGFIGPPGAKGERGDIGYAGQL 1229
Fly 1230 GFDGAE-----GLKGFQGDQGPRGPPG-----ITLP---AEKGDEGVAGLDGRAGRPGHFGQKGA 1281
Fly 1282 PGPPGENGPNGAIGHRGPQIQGPPGPQGDVGFPGAPGHNGRHGLIGPKGELGDMGRQGERGESGY 1346
Fly 1347 AIVGRQGDIGDIGFQGEPGWDGAKGEQGYPGLPGKNGRVGAPGPRGPTGDAGWGGIDGMDGLVGP 1411
Fly 1412 KGQPGVTYSYSMARPGDRGEPGLDGFQGEEGDGGAPGLIGFQGQRGAVGYRGDQGEVGY------ 1470
Fly 1471 TGADGPQGQRGDKGYMGLTGAPGLRGLPGPQGEPAPAPPAPKSRGFIFARHSQSVHVPQCPANTN 1535
Fly 1536 LLWEGYSLSGNVAASRAVGQDLGQSGSCMMRFTTMPYMLCDITNVCHFAQNNDDSLWLSTAEPMP 1600
Fly 1601 MTMTPIQGRDLMKYISRCVVCETTTRIIALHSQSMSIPDCPGGWEEMWTGYSYFMSTLDNVGGVG 1665
Fly 1666 QNLVSPGSCLEEFRAQPVIECH-GHGRCNYYDALASFWLTVIEEQDQFVQPRQQTLKAD-FTSKI 1728
Fly 1729 SRCTVCRR 1736 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
vkg | NP_001260071.1 | Collagen | 60..119 | CDD:189968 | 27/58 (47%) |
Collagen | 102..152 | CDD:189968 | 25/49 (51%) | ||
Collagen | 277..334 | CDD:189968 | 24/70 (34%) | ||
Collagen | 534..593 | CDD:189968 | 31/61 (51%) | ||
Collagen | 814..871 | CDD:189968 | 26/56 (46%) | ||
Collagen | 957..1014 | CDD:189968 | 24/73 (33%) | ||
Collagen | 990..1049 | CDD:189968 | 28/79 (35%) | ||
Collagen | 1070..1128 | CDD:189968 | 25/67 (37%) | ||
C4 | 1515..1624 | CDD:128421 | 49/108 (45%) | ||
C4 | 1625..1737 | CDD:128421 | 59/114 (52%) | ||
col4a2 | XP_002933063.2 | Collagen | 95..149 | CDD:396114 | 25/53 (47%) |
Collagen | 509..563 | CDD:396114 | 29/64 (45%) | ||
Collagen | 539..602 | CDD:396114 | 33/73 (45%) | ||
Med15 | 728..>1034 | CDD:312941 | 127/314 (40%) | ||
Collagen | 1169..1224 | CDD:396114 | 22/64 (34%) | ||
Collagen | 1434..1490 | CDD:396114 | 20/55 (36%) | ||
C4 | 1501..1605 | CDD:396133 | 46/105 (44%) | ||
C4 | 1611..1719 | CDD:396133 | 58/108 (54%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D41315at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000443 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.920 |