DRSC/TRiP Functional Genomics Resources

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Protein Alignment vkg and col4a1

DIOPT Version :9

Sequence 1:NP_001260071.1 Gene:vkg / 33726 FlyBaseID:FBgn0016075 Length:1940 Species:Drosophila melanogaster
Sequence 2:XP_002933064.3 Gene:col4a1 / 100124870 XenbaseID:XB-GENE-6451485 Length:1669 Species:Xenopus tropicalis


Alignment Length:1832 Identity:771/1832 - (42%)
Similarity:928/1832 - (50%) Gaps:269/1832 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 RHLSGLLGVVYLLGSLVSVTLADGKICNTTLCDCKGIKGRMGAPGPIGVPGLEGPAGDIGPPGRA 71
            |.|..||.::.|:|:..|...:.   |.|:.|||.|:||:.|..|..|:|||.|..|..||.|..
 Frog     4 RLLCALLILLGLIGTSDSAACSG---CGTSKCDCSGVKGQKGERGLPGLPGLMGFPGLQGPEGPP 65

  Fly    72 GPLGEKGDVGEYGEQGEKGHRGDIGPKGEMGYPGIMGKSGEPGTPGPRGIDGCDGRPGMQGPSGA 136
            ||||:|||.||.|..|.||.||..|..|..|.||:.|..|:.|.|||.||.||:|..|.:||.|.
 Frog    66 GPLGQKGDTGEPGLPGTKGTRGPPGSHGFPGNPGLPGIPGQDGPPGPSGIPGCNGTKGDRGPLGP 130

  Fly   137 PGQNGVRGPPGKPGQQGPPGEAGE-GGINSKGTKGNRGETGQPGGVGPPGFDGDRGSKGDTGYAG 200
            ||..|:.|.||.|||.||.||.|: .||:....||.:|..|..|..|.||..|..|..|..|..|
 Frog   131 PGLPGIIGYPGSPGQPGPKGEPGDITGIDVSMIKGEKGFPGINGIPGTPGLPGTPGPMGPIGPPG 195

  Fly   201 LTGEKGDPGLPGPKGDTGAVSELPYSLIGPPGAKGEPGDSLSGVLKPDDTLKGYKG---YVGLQG 262
            ..|..|..|.|||||:.|      .|..||.|.:|:.|.. ....||....:|.:.   |.|.:|
 Frog   196 SAGPPGSHGAPGPKGEMG------ISFYGPKGERGDRGPP-GAPCKPSTEPQGSENEQVYYGEKG 253

  Fly   263 DEGPQGPTGEQGAVGRNGLPGARGEIGGPGERGKPGKDGEPGRFGDKGMKGAPGWTGADGLDGSP 327
            ::|..|..||:|..|:: ..|.:||.|..|.||||||||:.|..|.:|:.|.||:.|..|..|:.
 Frog   254 EKGMPGENGERGQPGQS-FKGEKGEPGPLGPRGKPGKDGDQGEKGLQGVPGIPGFPGPPGFGGTK 317

  Fly   328 GERGEDGFTGMPGVQGGAGPPGIYDPSLTKSLPGPIGSQGDIGPPGEQGPPGLPGKPGRRGPIGL 392
            ||:||.|..|.||:....|...:.:.. .:.|||..||:||.|..|.||.||:||.||    :.|
 Frog   318 GEKGESGPQGPPGIVVSNGEIEVCEKG-DRGLPGFPGSKGDKGLKGAQGFPGIPGSPG----VPL 377

  Fly   393 AGQSGDPGLNGSRGP------PGRSERGEAGDYGFIGPPGPQGPPG--------EAGLPGRYGLH 443
            .|.:|.||..|.||.      ||.:.:|..|..||.||||..||||        ::|.||..||.
 Frog   378 PGSTGPPGFPGERGEKGQHGLPGLALQGPKGRDGFPGPPGLPGPPGAIDTSIECKSGQPGDPGLP 442

  Fly   444 GEPGQN-------VVGPKGE---------PGLNGQPGLEGYRGDRGEVGLPGDKGLPGE-GYNIV 491
            |.||||       ..|.||:         |||.|.||.:|..||:|..|:||.||..|. ||:  
 Frog   443 GNPGQNGFQGERGQKGDKGDACPSCDLVPPGLPGPPGPQGPPGDQGASGVPGIKGDRGHPGYD-- 505

  Fly   492 GPPGSQGPPGFRGLPGDDGYNG----------LRGLPGEKGLRG-DDCPVCNAGPRGPRGQEGDT 545
            ||||:.||.|..||.|..|..|          |:|..||.||.| ...|    |..|..|.:|..
 Frog   506 GPPGAPGPQGSAGLMGSPGAKGEPGEVFFEPRLKGDKGESGLPGHPGAP----GREGRPGIDGQQ 566

  Fly   546 GYPGSHGNRGAIGLTGPRGVQGLQGNPGRAGHKGLPGPA-----GIPGE------------PGKV 593
            |.|||.|..|.||..|.:|:.|.:|:||..|.:|.||||     |:|||            ||..
 Frog   567 GLPGSKGVAGTIGAKGEQGLPGDRGSPGNPGERGFPGPAGTGTSGLPGEKGEPGVPGFVGIPGTP 631

  Fly   594 GAAGPDGKAIEVGSLRKGEIGDTGDSGHRGDTGDDGEKGRDGSDGSKGERGETGQRGDYGDAGYQ 658
            ||.|..||||    ::.|..|..|.:|..|..||.||||..|..|..|.:||.|:.|..| .||.
 Frog   632 GAKGEPGKAI----IKTGPPGPMGGAGIPGFPGDQGEKGSPGHPGRPGSQGEKGEPGLPG-VGYP 691

  Fly   659 GRDGEPGRDGRDGAPGRNATTPKVYLIGEPGYDGIKGERGDDGDTGF--------KGVKGEPNPG 715
            |..||.|..|..|.||: |..|     |..|.||:.|.|||.|..|.        |||:|.|.| 
 Frog   692 GPSGEKGFQGMPGTPGQ-AGFP-----GPQGVDGLPGLRGDPGPKGEPGLGLPGPKGVQGPPGP- 749

  Fly   716 QIYDNTGEPGEDGYTGPKGVKGAKGEQGAIGLRGEIGDRGPAGEV-IPGPVGAKGYP--GPTGDY 777
                 .|.||:.|..|..||   .||||..|:.|..|.:|.||.| :||..|..|.|  ||.|..
 Frog   750 -----VGIPGDKGNPGASGV---PGEQGFSGVPGHPGHKGEAGIVGVPGIQGPPGVPGMGPKGQQ 806

  Fly   778 GQQGAPGLPGRDGEPGLDGGIGYKGQRG--VPGQEVIQGEIGPPGRSGIKGFPGDVGAPGQYGLA 840
            |..|..||.|..|..|:.|..||.|..|  :||.:..:|.||.||.:|..|.||..||||:.||.
 Frog   807 GSSGPQGLSGFPGPAGVKGERGYAGFPGLDMPGPKGDKGNIGSPGPTGATGIPGQPGAPGKEGLP 871

  Fly   841 GRPGPKGVKGEQGPDGAVGQTGLPGN------KGQRGDFLVGPPGPKGQPGRNGRQAPHGAKGQK 899
            |.|||||..|..|..|::||.|.||:      ||..|.|  ||||..|.||..|.:...|.:|:.
 Frog   872 GFPGPKGEMGVMGMPGSIGQPGAPGSPGALGEKGDAGPF--GPPGTSGYPGTKGEKGEEGLRGEP 934

  Fly   900 GEVGSL------GQNGQNGAKGSIGFSGRRGLLGNAGLQGLPGSPGIPGLPGMIGEIGERGEIGY 958
            |::...      |..|:.|.:|.||.||.:|.||:.      ||||:|            |:.|.
 Frog   935 GKMSETDKETMKGSKGEKGERGEIGISGEKGSLGDF------GSPGMP------------GKDGQ 981

  Fly   959 NGRQGDIGPRGPNGEFGPKGLSGDDGPDGYPGANGLPGRKGETGNPGFPGRPGAKGVAAYSGIKG 1023
            .|.||:.||:|..|..|.||..|..|..|..|..||||..||.|..|..|.||:.|:....|.||
 Frog   982 QGVQGESGPKGEKGSQGIKGSQGLQGQKGSIGEMGLPGPTGEKGQHGISGSPGSPGLGGIKGEKG 1046

  Fly  1024 DDGESGLTGPIGYPGAPGAKGQRGPVGDSQPALDGVAGRKGEVGSPGPNGLPGRHGLKGQRGDRG 1088
            ..||.||.| ||.||.||.||..|  .|....|.|..|.||:||.|   |:||..|.||..|..|
 Frog  1047 LKGEVGLPG-IGIPGVPGVKGDAG--RDGPHGLPGERGDKGDVGIP---GMPGFPGSKGATGHAG 1105

  Fly  1089 LPGQQGRPGEPGAK---GLGGYPGRNGINGLKGATGFPGPQGPKGPQGESGVVGLDGRNGQIGDQ 1150
            :||..|.|||.|||   ||.|.||:.|:.|..|..|.||..|.||..|..|:.|..|..|:.|..
 Frog  1106 IPGSPGLPGEKGAKGTHGLVGIPGQKGLTGDSGVQGPPGHSGEKGEPGYDGIPGSPGEKGEAGIP 1170

  Fly  1151 GPRGLIGEQGEQGEQGDEGEVGIPGRLENLRDRSFYRGFTGDQGLQGERGEQGDMGPIGFIGPPG 1215
            | |||.|..||.||:|.:|::|.||    ....|...|..|||||.|.:|.|   ||.||.||.|
 Frog  1171 G-RGLPGHPGEHGEKGSKGDIGFPG----APGISGVPGIKGDQGLPGFQGPQ---GPPGFPGPSG 1227

  Fly  1216 --AKGERGDIGYAGQLGFDGAEGLKGFQGDQGPRGPPGITLPAEKGDEGVAGLDGRAGRPGHFGQ 1278
              .:|.:|:.|..||.|:.|:         .||.|.||.|     |.:|:.|..|..|.||..|.
 Frog  1228 IPMEGPKGEKGQPGQAGYPGS---------PGPVGLPGHT-----GQDGLKGEKGERGWPGALGF 1278

  Fly  1279 KGAPGPPGENGPNGAIGHRGPQIQGPPGPQGDVGFPGAPGHNGRHGLIGPKGELGDMGRQGERGE 1343
            :|..|..|..||:   |..||  .|..|.:||.|.||.||..|..|.:|..||.||.|.||    
 Frog  1279 QGIKGDTGNQGPS---GDAGP--SGITGQKGDTGPPGIPGFPGLKGSLGISGEKGDRGDQG---- 1334

  Fly  1344 SGYAIVGRQGDIGDIGFQGEPGWDG----AKGEQGYPGLPGKNGRVGAPGPRGPTGDAGWGGIDG 1404
                |.|.:||:      |.||..|    .|||.            |.|||:||:|..      |
 Frog  1335 ----ITGPKGDL------GPPGPAGTHTVTKGES------------GEPGPQGPSGPR------G 1371

  Fly  1405 MDGLVGPKGQPGVTYSYSMARPGDRGEPGLDGFQGEEGDGGAPGLIGFQGQRGAVGYRGDQGEVG 1469
            :.||.||||..|||                 |..|..|..|.||:.|..||:|.           
 Frog  1372 IQGLPGPKGDKGVT-----------------GASGLPGPSGIPGIHGTPGQKGE----------- 1408

  Fly  1470 YTGADGPQGQRGDKGYMGLTGAPGLRGLPGPQGEPAPAPPAPKSRGFIFARHSQSVHVPQCPANT 1534
             ||..||.||      .|..|.||..|||||.|  .|..|: .:.||:..||||:...||||..|
 Frog  1409 -TGPSGPTGQ------TGYPGPPGSDGLPGPIG--LPGSPS-MAHGFLVTRHSQTTETPQCPFGT 1463

  Fly  1535 NLLWEGYSL---SGNVAASRAVGQDLGQSGSCMMRFTTMPYMLCDITNVCHFAQNNDDSLWLSTA 1596
            ..::.||||   .||   .||.|||||.||||:.:|:|||::.|:|.|||:||..||.|.||||.
 Frog  1464 TAVYSGYSLLYVQGN---ERAHGQDLGASGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTP 1525

  Fly  1597 EPMPMTMTPIQGRDLMKYISRCVVCETTTRIIALHSQSMSIPDCPGGWEEMWTGYSYFMSTLDNV 1661
            |||||:|.||.|..:..:||||.|||....::|:|||::.||.||.||..:|.|||:.|.|....
 Frog  1526 EPMPMSMAPITGDGIKPFISRCTVCEVPAMVMAVHSQTIQIPQCPDGWISLWIGYSFVMQTSAGA 1590

  Fly  1662 GGVGQNLVSPGSCLEEFRAQPVIECHGHGRCNYYDALASFWLTVIEEQDQFVQPRQQTLKA-DFT 1725
            .|.||.|.||||||||||:.|.|||||.|.||||....||||..||:.:.|.:|...|||| |..
 Frog  1591 EGSGQALASPGSCLEEFRSVPFIECHGRGTCNYYANTYSFWLATIEKNEMFKKPTPSTLKAGDLR 1655

  Fly  1726 SKISRCTVCRRR 1737
            :.:|||.||.||
 Frog  1656 THVSRCQVCMRR 1667

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vkgNP_001260071.1 Collagen 60..119 CDD:189968 30/58 (52%)
Collagen 102..152 CDD:189968 26/49 (53%)
Collagen 277..334 CDD:189968 27/56 (48%)
Collagen 534..593 CDD:189968 30/75 (40%)
Collagen 814..871 CDD:189968 31/62 (50%)
Collagen 957..1014 CDD:189968 26/56 (46%)
Collagen 990..1049 CDD:189968 30/58 (52%)
Collagen 1070..1128 CDD:189968 28/60 (47%)
C4 1515..1624 CDD:128421 62/111 (56%)
C4 1625..1737 CDD:128421 59/112 (53%)
col4a1XP_002933064.3 Collagen 546..600 CDD:396114 23/57 (40%)
Collagen 579..637 CDD:396114 22/57 (39%)
Collagen 675..733 CDD:396114 28/64 (44%)
PRK14959 <807..929 CDD:184923 55/123 (45%)
Collagen 848..900 CDD:396114 27/51 (53%)
Collagen 1066..1120 CDD:396114 27/58 (47%)
Collagen 1117..1171 CDD:396114 23/53 (43%)
Collagen 1238..1294 CDD:396114 25/72 (35%)
Collagen 1355..1405 CDD:396114 27/84 (32%)
Collagen 1383..1439 CDD:396114 30/92 (33%)
C4 1445..1551 CDD:396133 59/108 (55%)
C4 1555..1665 CDD:396133 58/109 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 135 1.000 Domainoid score I4934
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D41315at33208
OrthoFinder 1 1.000 - - FOG0000443
OrthoInspector 1 1.000 - - otm48261
Panther 1 1.100 - - O PTHR24023
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.020

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