Sequence 1: | NP_001260071.1 | Gene: | vkg / 33726 | FlyBaseID: | FBgn0016075 | Length: | 1940 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_002933064.3 | Gene: | col4a1 / 100124870 | XenbaseID: | XB-GENE-6451485 | Length: | 1669 | Species: | Xenopus tropicalis |
Alignment Length: | 1832 | Identity: | 771/1832 - (42%) |
---|---|---|---|
Similarity: | 928/1832 - (50%) | Gaps: | 269/1832 - (14%) |
- Green bases have known domain annotations that are detailed below.
Fly 7 RHLSGLLGVVYLLGSLVSVTLADGKICNTTLCDCKGIKGRMGAPGPIGVPGLEGPAGDIGPPGRA 71
Fly 72 GPLGEKGDVGEYGEQGEKGHRGDIGPKGEMGYPGIMGKSGEPGTPGPRGIDGCDGRPGMQGPSGA 136
Fly 137 PGQNGVRGPPGKPGQQGPPGEAGE-GGINSKGTKGNRGETGQPGGVGPPGFDGDRGSKGDTGYAG 200
Fly 201 LTGEKGDPGLPGPKGDTGAVSELPYSLIGPPGAKGEPGDSLSGVLKPDDTLKGYKG---YVGLQG 262
Fly 263 DEGPQGPTGEQGAVGRNGLPGARGEIGGPGERGKPGKDGEPGRFGDKGMKGAPGWTGADGLDGSP 327
Fly 328 GERGEDGFTGMPGVQGGAGPPGIYDPSLTKSLPGPIGSQGDIGPPGEQGPPGLPGKPGRRGPIGL 392
Fly 393 AGQSGDPGLNGSRGP------PGRSERGEAGDYGFIGPPGPQGPPG--------EAGLPGRYGLH 443
Fly 444 GEPGQN-------VVGPKGE---------PGLNGQPGLEGYRGDRGEVGLPGDKGLPGE-GYNIV 491
Fly 492 GPPGSQGPPGFRGLPGDDGYNG----------LRGLPGEKGLRG-DDCPVCNAGPRGPRGQEGDT 545
Fly 546 GYPGSHGNRGAIGLTGPRGVQGLQGNPGRAGHKGLPGPA-----GIPGE------------PGKV 593
Fly 594 GAAGPDGKAIEVGSLRKGEIGDTGDSGHRGDTGDDGEKGRDGSDGSKGERGETGQRGDYGDAGYQ 658
Fly 659 GRDGEPGRDGRDGAPGRNATTPKVYLIGEPGYDGIKGERGDDGDTGF--------KGVKGEPNPG 715
Fly 716 QIYDNTGEPGEDGYTGPKGVKGAKGEQGAIGLRGEIGDRGPAGEV-IPGPVGAKGYP--GPTGDY 777
Fly 778 GQQGAPGLPGRDGEPGLDGGIGYKGQRG--VPGQEVIQGEIGPPGRSGIKGFPGDVGAPGQYGLA 840
Fly 841 GRPGPKGVKGEQGPDGAVGQTGLPGN------KGQRGDFLVGPPGPKGQPGRNGRQAPHGAKGQK 899
Fly 900 GEVGSL------GQNGQNGAKGSIGFSGRRGLLGNAGLQGLPGSPGIPGLPGMIGEIGERGEIGY 958
Fly 959 NGRQGDIGPRGPNGEFGPKGLSGDDGPDGYPGANGLPGRKGETGNPGFPGRPGAKGVAAYSGIKG 1023
Fly 1024 DDGESGLTGPIGYPGAPGAKGQRGPVGDSQPALDGVAGRKGEVGSPGPNGLPGRHGLKGQRGDRG 1088
Fly 1089 LPGQQGRPGEPGAK---GLGGYPGRNGINGLKGATGFPGPQGPKGPQGESGVVGLDGRNGQIGDQ 1150
Fly 1151 GPRGLIGEQGEQGEQGDEGEVGIPGRLENLRDRSFYRGFTGDQGLQGERGEQGDMGPIGFIGPPG 1215
Fly 1216 --AKGERGDIGYAGQLGFDGAEGLKGFQGDQGPRGPPGITLPAEKGDEGVAGLDGRAGRPGHFGQ 1278
Fly 1279 KGAPGPPGENGPNGAIGHRGPQIQGPPGPQGDVGFPGAPGHNGRHGLIGPKGELGDMGRQGERGE 1343
Fly 1344 SGYAIVGRQGDIGDIGFQGEPGWDG----AKGEQGYPGLPGKNGRVGAPGPRGPTGDAGWGGIDG 1404
Fly 1405 MDGLVGPKGQPGVTYSYSMARPGDRGEPGLDGFQGEEGDGGAPGLIGFQGQRGAVGYRGDQGEVG 1469
Fly 1470 YTGADGPQGQRGDKGYMGLTGAPGLRGLPGPQGEPAPAPPAPKSRGFIFARHSQSVHVPQCPANT 1534
Fly 1535 NLLWEGYSL---SGNVAASRAVGQDLGQSGSCMMRFTTMPYMLCDITNVCHFAQNNDDSLWLSTA 1596
Fly 1597 EPMPMTMTPIQGRDLMKYISRCVVCETTTRIIALHSQSMSIPDCPGGWEEMWTGYSYFMSTLDNV 1661
Fly 1662 GGVGQNLVSPGSCLEEFRAQPVIECHGHGRCNYYDALASFWLTVIEEQDQFVQPRQQTLKA-DFT 1725
Fly 1726 SKISRCTVCRRR 1737 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
vkg | NP_001260071.1 | Collagen | 60..119 | CDD:189968 | 30/58 (52%) |
Collagen | 102..152 | CDD:189968 | 26/49 (53%) | ||
Collagen | 277..334 | CDD:189968 | 27/56 (48%) | ||
Collagen | 534..593 | CDD:189968 | 30/75 (40%) | ||
Collagen | 814..871 | CDD:189968 | 31/62 (50%) | ||
Collagen | 957..1014 | CDD:189968 | 26/56 (46%) | ||
Collagen | 990..1049 | CDD:189968 | 30/58 (52%) | ||
Collagen | 1070..1128 | CDD:189968 | 28/60 (47%) | ||
C4 | 1515..1624 | CDD:128421 | 62/111 (56%) | ||
C4 | 1625..1737 | CDD:128421 | 59/112 (53%) | ||
col4a1 | XP_002933064.3 | Collagen | 546..600 | CDD:396114 | 23/57 (40%) |
Collagen | 579..637 | CDD:396114 | 22/57 (39%) | ||
Collagen | 675..733 | CDD:396114 | 28/64 (44%) | ||
PRK14959 | <807..929 | CDD:184923 | 55/123 (45%) | ||
Collagen | 848..900 | CDD:396114 | 27/51 (53%) | ||
Collagen | 1066..1120 | CDD:396114 | 27/58 (47%) | ||
Collagen | 1117..1171 | CDD:396114 | 23/53 (43%) | ||
Collagen | 1238..1294 | CDD:396114 | 25/72 (35%) | ||
Collagen | 1355..1405 | CDD:396114 | 27/84 (32%) | ||
Collagen | 1383..1439 | CDD:396114 | 30/92 (33%) | ||
C4 | 1445..1551 | CDD:396133 | 59/108 (55%) | ||
C4 | 1555..1665 | CDD:396133 | 58/109 (53%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 135 | 1.000 | Domainoid score | I4934 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D41315at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000443 | |
OrthoInspector | 1 | 1.000 | - | - | otm48261 | |
Panther | 1 | 1.100 | - | - | O | PTHR24023 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
6 | 6.020 |