DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rtnl1 and RTNLB3

DIOPT Version :9

Sequence 1:NP_001162875.1 Gene:Rtnl1 / 33721 FlyBaseID:FBgn0053113 Length:607 Species:Drosophila melanogaster
Sequence 2:NP_001185307.1 Gene:RTNLB3 / 842713 AraportID:AT1G64090 Length:271 Species:Arabidopsis thaliana


Alignment Length:208 Identity:56/208 - (26%)
Similarity:100/208 - (48%) Gaps:34/208 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   414 LIYWRDVKKSGIVFGAGLIT--LAAISSFSVISVFAYLSLLTLFGTVAFRIYKSVTQAVQKTNEG 476
            :..||:.|.||.|.||..::  |..:..::::::|.::|:|.|  .|.| ::.|.:..:.|:...
plant    83 IFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILAL--AVLF-LWSSASTFIHKSPLH 144

  Fly   477 HPFKDYLELDLTLSHEKVQNIAGVAVAHINGFISELRRLFLV-EDII---DSIKFGVI---LWVF 534
            .|       ::.:..:.|..:|       :|...|:.|.|.| .||.   |..||.::   |||.
plant   145 IP-------EVHIPEDVVLQLA-------SGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVL 195

  Fly   535 TYVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLDLVRSKLTEITDK-----IRVAIPIGN 594
            :.||:..|.:||:.:|.|.|||:|.:||..:..:|   |.....:.||..:     ::|...:.:
plant   196 SKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVD---DFGEKAMREIKKQYVEFDVKVLSKVMS 257

  Fly   595 KKPEAAAESEKDK 607
            |.|:.|....|.|
plant   258 KIPKGAFAFIKKK 270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rtnl1NP_001162875.1 Reticulon 411..575 CDD:280592 48/169 (28%)
RTNLB3NP_001185307.1 Reticulon 80..236 CDD:280592 48/172 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 65 1.000 Domainoid score I3611
eggNOG 1 0.900 - - E1_KOG1792
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.770

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