DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rtnl1 and AT5G58000

DIOPT Version :9

Sequence 1:NP_001162875.1 Gene:Rtnl1 / 33721 FlyBaseID:FBgn0053113 Length:607 Species:Drosophila melanogaster
Sequence 2:NP_001331115.1 Gene:AT5G58000 / 835911 AraportID:AT5G58000 Length:593 Species:Arabidopsis thaliana


Alignment Length:547 Identity:121/547 - (22%)
Similarity:191/547 - (34%) Gaps:148/547 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   172 EEDLLGSFTDQPSAPLQAFQPTAPST-----ANFYDDEEDDFLGKPTTAAPAAPVAPLTKANQDS 231
            :|.|||....:.:...:|.....|||     ||.....:...:|.|    |..|...|  ::.||
plant    60 DETLLGVNGKRRTWKSRASDVKNPSTLEIVRANSLKVTKPRSIGTP----PMTPRRSL--SSSDS 118

  Fly   232 DTESPSVSYTPSPAKKPIVDALKDQDNE---KFISSEDL-----ASDFKEEPRSAPTPAPAPAPI 288
            :.:|||||.....|:...|:.::.:...   |.|.||..     |.:|...........|:|.. 
plant   119 NDKSPSVSVVAKKARSESVEGIEKKTTPGRVKKIRSEVCTTIVKAGEFDSVALRKVNSLPSPNS- 182

  Fly   289 LDAAPAVAPAPVAVPVSVPVAKPQPVPVAVP--------VTTAL-------------ITDLDD-- 330
                   ..:.......|.:.:...:|..|.        :.:|.             |.|.||  
plant   183 -------EKSDTKTEQEVTIIENSKIPEEVKEFGVCQEMIVSAKSNENEQIDNGDQEIGDQDDYE 240

  Fly   331 -------EEVVFKPT--VQEAPKAPTIAAPVVEPK--------PEPPKPKVEPAKPKVVP----- 373
                   |..|.|.:  |:|...|.......||.|        ..|....|....|.|:.     
plant   241 EDGDEEEEREVEKKSVDVKEINVAKENRVGGVEIKKFSQFQNRTSPSPSSVRKISPPVIKRATSV 305

  Fly   374 -VAPVESTQPQPKIASVEEIFCKYGLDAWFKPERLHPQVESLIYWRDVKKSGIVFGAGLITLAAI 437
             .||..||....:.|..|:.|.       ....:|...|: |:.||||.:|.:|||.|  |...|
plant   306 YSAPPNSTSSTDRFAEQEDNFT-------HSQSKLQSLVD-LVMWRDVSRSTLVFGFG--TFLII 360

  Fly   438 SS-------FSVISVFAYLSLLTLFGTVAFRIYKSVTQAVQKTNEGHPFKDYLELDLTLSHEKVQ 495
            ||       ||.|||.||:.|:.|  .:.| :.||:........|.|..       :.:..|.|:
plant   361 SSSYANDLNFSFISVVAYMGLIYL--GLMF-VLKSLIHRGMVEEERHKV-------VGVREEDVK 415

  Fly   496 NIAGVAVAHINGFISELRRLFLVEDIIDSIKFGVILWVFTYVGAWFNGMTLVILAFVSLFTLPKV 560
            .:..:.:.::|..:.:||.|| ..|...::|.||:|:|....|:......|....|:..||:||:
plant   416 RMLRLIMPYLNESLHQLRALF-SGDPSTTLKMGVVLFVLARCGSSITLWNLAKFGFLGAFTIPKI 479

  Fly   561 YE------------------------NNKQSIDTHLDLVRSKLTEITDKIRVAIPI--------- 592
            :.                        |:|:::...|..:...|:.:|.::..|..:         
plant   480 FISYSTHFSAYGNFWMRRFRDAWESCNHKKAVALALFTLVWNLSSVTARVWAAFMLLVAFRYYQH 544

  Fly   593 --------------GNKKPEAAAESEK 605
                          .|::.||..|.|:
plant   545 KMIWTTDQADDDEDDNEEEEAEEEKEQ 571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rtnl1NP_001162875.1 Reticulon 411..575 CDD:280592 52/194 (27%)
AT5G58000NP_001331115.1 Reticulon 338..486 CDD:396837 48/161 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
21.870

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