DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rtnl1 and AT3G10915

DIOPT Version :9

Sequence 1:NP_001162875.1 Gene:Rtnl1 / 33721 FlyBaseID:FBgn0053113 Length:607 Species:Drosophila melanogaster
Sequence 2:NP_001326431.1 Gene:AT3G10915 / 820262 AraportID:AT3G10915 Length:251 Species:Arabidopsis thaliana


Alignment Length:176 Identity:35/176 - (19%)
Similarity:69/176 - (39%) Gaps:54/176 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   448 YLSL-LTLFGTVAFRIYKSVTQAVQKTNEGHPF----KDYLELDLTLS--HEKVQNIAGVAVAHI 505
            :||| :.:..|||:.|::.         .|.||    .|.|.:.:.:|  |.:|.       |..
plant    76 HLSLGVIIISTVAWLIFEF---------SGLPFLSVSSDVLLIVIMISFVHARVS-------AFR 124

  Fly   506 NGFISELRRLFLVEDIIDS----------------------------IKFGVILWVFTYVGAWFN 542
            |..:..|..|.|.|::::|                            .|..:.||:.:.:|::.:
plant   125 NRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYIS 189

  Fly   543 GMTLVILAFVSLFTLPKVYENNKQSIDTHLDLVRSKLT---EITDK 585
            ..||:.:..:...|:|.:|...:..:|.....:..:|:   :|.|:
plant   190 LCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDE 235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rtnl1NP_001162875.1 Reticulon 411..575 CDD:280592 32/161 (20%)
AT3G10915NP_001326431.1 Reticulon 67..222 CDD:396837 32/161 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 65 1.000 Domainoid score I3611
eggNOG 1 0.900 - - E1_KOG1792
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.770

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