DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Rtnl1 and AT2G43420

DIOPT Version :9

Sequence 1:	NP_001162875.1	Gene:	Rtnl1 / 33721	FlyBaseID:	FBgn0053113	Length:	607	Species:	Drosophila melanogaster
Sequence 2:	NP_565998.1	Gene:	AT2G43420 / 818943	AraportID:	AT2G43420	Length:	561	Species:	Arabidopsis thaliana

Alignment Length:	210	Identity:	39/210 - (18%)
Similarity:	78/210 - (37%)	Gaps:	51/210 - (24%)

- Green bases have known domain annotations that are detailed below.

  Fly   410 QVESLIYWRDVKKSGIVFGAGLITLAAISSFSVISVFAY-------------LSLLTLFGTVAFR 461
            :|..::.||:.||:.:             ||.|:::|.|             ..||.:|....:.
plant   378 KVADILLWRNEKKTFV-------------SFLVLNLFYYWFFFSGNTFTSSAAQLLFIFAVALYG 429

  Fly   462 IYKSVTQAV--QKTNEGHPFKDYLELDLTLSHEKVQNIAGVAVAHINGFISELRRLFLVEDIIDS 524
            : ..|...:  .:.|:..|::      ..:|...|::::...|...|..:...:.|....|.|..
plant   430 V-SFVPSKIFGFQVNKIPPWR------FEISESAVRDLSSDIVVVWNQGVRSFKSLSSGGDWIKF 487

  Fly   525 IKFGVILWVFTYV-----GAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLDLVRSKLTEITD 584
            .|....|::...:     .|:.  .|::..:|...|    :||..:..:   ..|.|..:..:|.
plant   488 FKIAGSLYLLKLIVSRSLAAFL--FTVMSFSFTGFF----IYEQYELEL---YHLARIFVECLTF 543

  Fly   585 KIRVAIPI--GNKKP 597
            ..|:.||:  .:.||
plant   544 IKRMVIPVSDASSKP 558

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Rtnl1	NP_001162875.1	Reticulon	411..575	CDD:280592	31/183 (17%)
AT2G43420	NP_565998.1	3b-HSD-NSDHL-like_SDR_e	14..354	CDD:187673
AT2G43420	NP_565998.1	Reticulon	379..537	CDD:367092	33/186 (18%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910