DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rtnl1 and AT2G15280

DIOPT Version :9

Sequence 1:NP_001162875.1 Gene:Rtnl1 / 33721 FlyBaseID:FBgn0053113 Length:607 Species:Drosophila melanogaster
Sequence 2:NP_179130.2 Gene:AT2G15280 / 816017 AraportID:AT2G15280 Length:201 Species:Arabidopsis thaliana


Alignment Length:189 Identity:39/189 - (20%)
Similarity:77/189 - (40%) Gaps:30/189 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   411 VESLIYWRDVKKSGIVFGAG-----LITLAAISSFSVISVFAYLSLLTLF----GTVAFRIYKSV 466
            |..||.|::.:...::.|:.     |......|.|..:.....||::.||    ..:.|      
plant    14 VADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILF------ 72

  Fly   467 TQAVQKTNEGHPFKDYLELDLTLSHEKVQNIAGVAVAHINGFISELRRLFLVEDIIDSIKFGVIL 531
                     ..|......|::|  .|.|..:|......||..::..|.:::..:.....:..|:|
plant    73 ---------NRPMPQLPNLEIT--EEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVL 126

  Fly   532 WVFTYVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLDL----VRSKLTEITDKI 586
            |..::||.:.|.:|::.|..|....:|.:||..:..||..|.|    ::::..:|.:::
plant   127 WTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDERL 185

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rtnl1NP_001162875.1 Reticulon 411..575 CDD:280592 38/176 (22%)
AT2G15280NP_179130.2 Reticulon 14..169 CDD:280592 37/171 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 65 1.000 Domainoid score I3611
eggNOG 1 0.900 - - E1_KOG1792
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.770

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