DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rtnl1 and rtn2

DIOPT Version :9

Sequence 1:NP_001162875.1 Gene:Rtnl1 / 33721 FlyBaseID:FBgn0053113 Length:607 Species:Drosophila melanogaster
Sequence 2:NP_001107739.1 Gene:rtn2 / 100135745 XenbaseID:XB-GENE-941644 Length:321 Species:Xenopus tropicalis


Alignment Length:343 Identity:108/343 - (31%)
Similarity:164/343 - (47%) Gaps:72/343 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   292 APAVAPAPVAVPVSVPVAKPQPVPVAVPVTTALITDLDDEEVVFKPTVQEAPKAPTIA------- 349
            ||:.|.   :.|.|.|   |:......|||          ||.|.|.  .:|..||.:       
 Frog    13 APSTAS---STPDSCP---PEGEEDDSPVT----------EVNFWPL--PSPHEPTFSYITIGST 59

  Fly   350 APVVEPKPE------------PPKPKVEPAKPK-VVPVAPVEST----QPQPKIASVEEIFCKYG 397
            ||:..|...            .|:.:.|..:.| ||....:|.|    :..|.....|.:|..  
 Frog    60 APLSRPPVRARRGLGQSRVHAAPREETEEKEVKDVVTYVLLEKTCQLKKLSPPHVQEEVVFVA-- 122

  Fly   398 LDAWFKPERLHPQVE------SLIYWRDVKKSGIVFGAGLIT-----LAAISSFSVISVFAYLSL 451
                 ||:   ||:|      .|:||||     |:..||.:|     |..:|.|||||||||..|
 Frog   123 -----KPQ---PQLEVFRAVKDLLYWRD-----ILLSAGCLTGVTLSLLCLSQFSVISVFAYGCL 174

  Fly   452 LTLFGTVAFRIYKSVTQAVQKTNEGHPFKDYLELDLTLSHEKVQNIAGVAVAHINGFISELRRLF 516
            :.|..|:..|:|..:..|:::.|..:||:.||:.||.|:.::.:.|....::.::..|..||.||
 Frog   175 IILSVTLTLRLYTKLLHALKRGNGANPFQYYLDADLKLTTKQAEEITARVLSLLSTTICTLRSLF 239

  Fly   517 LVEDIIDSIKFGVILWVFTYVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLDLVRSKLTE 581
            |||::.||:||.||:::.|||||.|||:|:::|..:..||.|.:|:.::..:|.::.||..| ..
 Frog   240 LVEELKDSLKFLVIIYLLTYVGAVFNGITVLLLCVIGAFTFPILYKQHQTQVDHYVSLVSKKXNA 304

  Fly   582 ITDKIRVAIPIGNKKPEA 599
            ...||:..:    |||.|
 Frog   305 FRSKIQGTV----KKPPA 318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rtnl1NP_001162875.1 Reticulon 411..575 CDD:280592 65/174 (37%)
rtn2NP_001107739.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..36 8/28 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 65..85 2/19 (11%)
Reticulon 134..298 CDD:280592 64/168 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000492
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR45799
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2275
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.040

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