DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gmd and gmds

DIOPT Version :9

Sequence 1:NP_608888.2 Gene:Gmd / 33716 FlyBaseID:FBgn0031661 Length:395 Species:Drosophila melanogaster
Sequence 2:NP_956783.3 Gene:gmds / 393461 ZFINID:ZDB-GENE-050419-45 Length:377 Species:Danio rerio


Alignment Length:369 Identity:257/369 - (69%)
Similarity:299/369 - (81%) Gaps:9/369 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 TEAGAEGDS--RDKVALITGITGQDGSYLAEFLLKKDYEVHGIIRRASTFNTTRIEHLYADPKAH 98
            |..|..|||  :.|||:||||||||||||||.||.|.||||||:||:|:|||.||||||.:|:.|
Zfish     9 TGGGMNGDSKRKRKVAIITGITGQDGSYLAELLLAKGYEVHGILRRSSSFNTGRIEHLYHNPQTH 73

  Fly    99 KGG-------RMKLHYGDMTDSSSLVKIINMVKPTEIYNLAAQSHVKVSFDLSEYTAEVDAVGTL 156
            ..|       .|||||||:|||:.||||||.|||||||||.||||||:||||:||||:||.||||
Zfish    74 TEGSIGATKDHMKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTL 138

  Fly   157 RILDAIRTCGMEKNVRFYQASTSELYGKVVETPQNEQTPFYPRSPYACAKMYGFWIVINYREAYN 221
            |:|||::|||:...|||||||||||||||.|.||.|.|||||||||..||:|.:|||||:|||||
Zfish   139 RLLDAVKTCGLTDTVRFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVINFREAYN 203

  Fly   222 MYACNGILFNHESPRRGENFVTRKITRSVAKIYHKQMEYFELGNLDSKRDWGHASDYVEAMWMML 286
            ::|.|||||||||||||.|||||||:||||||:..|:|.|.||||||.||||||.|||||||:||
Zfish   204 LFAVNGILFNHESPRRGSNFVTRKISRSVAKIHLGQLECFSLGNLDSMRDWGHAKDYVEAMWLML 268

  Fly   287 QRESPSDYVIATGETHSVREFVEAAFKHIDREITWKGKGVDEVGVENGTGIVRVRINPKYFRPTE 351
            |:|.|.|:||||||.||||||||.||||:.:.|.|:||...|||....||::.||::|||:||||
Zfish   269 QQEEPVDFVIATGEVHSVREFVERAFKHVGKTIVWEGKDEKEVGRCQETGVIHVRVDPKYYRPTE 333

  Fly   352 VDLLQGDASKANRELNWTPKVTFVELVSDMMKADIELMRKNPIA 395
            ||.||||:|||.:.|.|.|:|||.|||.:|:.|||:||:.||.|
Zfish   334 VDYLQGDSSKAFKVLGWKPRVTFEELVKEMVDADIKLMQNNPNA 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GmdNP_608888.2 NADB_Rossmann 47..389 CDD:304358 247/348 (71%)
GDP_Man_Dehyd 50..381 CDD:292973 240/337 (71%)
gmdsNP_956783.3 gmd 22..371 CDD:273644 247/348 (71%)
GDP_Man_Dehyd 26..363 CDD:292973 240/336 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170587058
Domainoid 1 1.000 501 1.000 Domainoid score I337
eggNOG 1 0.900 - - E1_COG1089
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H75968
Inparanoid 1 1.050 526 1.000 Inparanoid score I1203
OMA 1 1.010 - - QHG61241
OrthoDB 1 1.010 - - D305068at33208
OrthoFinder 1 1.000 - - FOG0004405
OrthoInspector 1 1.000 - - oto41600
orthoMCL 1 0.900 - - OOG6_101732
Panther 1 1.100 - - LDO PTHR43715
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3125
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.770

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