DRSC/TRiP Functional Genomics Resources

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Protein Alignment mRpL28 and mrpl28

DIOPT Version :10

Sequence 1:NP_608887.1 Gene:mRpL28 / 33715 FlyBaseID:FBgn0031660 Length:302 Species:Drosophila melanogaster
Sequence 2:NP_001019570.1 Gene:mrpl28 / 554098 ZFINID:ZDB-GENE-050522-113 Length:252 Species:Danio rerio


Alignment Length:249 Identity:87/249 - (34%)
Similarity:129/249 - (51%) Gaps:21/249 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 RFDKGLGAQLPEAYRKFWREWKLTTPAAVHYIPKEQQWERDEVTHAIKPVQNIPLPLIDTPESHR 84
            :..||:.|:||:.|.:..::  .:.|..||:.|...::..:..|...:.||::|:|:...|||..
Zfish    15 KLQKGIYARLPQHYLRSLQD--TSPPTTVHWKPLGVKYRINPDTRQRERVQDVPIPIYYPPESQD 77

  Fly    85 GIWGGEAVIKGFQ--KREQTKRRVPHFWVPNLRRSVVHSHVLDCYMSVVVTERTLEQIHECHGFD 147
            |:||||..|.||:  |.::...|:|..|.|.|....::|.:||...||.||.|.|:.|....|||
Zfish    78 GLWGGEGWISGFRYAKDDKLSTRLPKTWKPQLFTRELYSEILDQKFSVTVTSRALDLIDAAFGFD 142

  Fly   148 HYLLKNRACDLRSALALKLKREVLQALQNGVPALADE---PERQQEVLKEYRRYLEPYTP-EEID 208
            .|:||....||.|...:.|||.:|..|     |..|.   ||.||...|.|:||.:...| ||.:
Zfish   143 FYILKTPKQDLNSKFGMNLKRAMLLRL-----ARKDTDLYPEDQQRKEKIYKRYKQFEVPEEEAE 202

  Fly   209 WYGHTYLEAIRKLQKQLREAEKVVPHKLEFRG---KLIEQLRQAGISEAGKLEK 259
            |.|.:..||:.| |:.|   ||..|..| ::|   .|:::|....:||...:||
Zfish   203 WVGLSLEEAVEK-QRLL---EKKDPEPL-YKGLVKSLVQELALKKLSEPQIVEK 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRpL28NP_608887.1 None
mrpl28NP_001019570.1 Ribosomal_L28 82..136 CDD:459953 20/53 (38%)

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