Protein Alignment Polr1C and ATRPAC42

DIOPT Version :10

• Sequence 1: NP_608885.1
• Gene: Polr1C / 33712
• FlyBaseID: FBgn0031657
• Length: 333
• Species: Drosophila melanogaster
• Sequence 2: NP_176282.1
• Gene: ATRPAC42 / 842377
• AraportID: AT1G60850
• Length: 375
• Species: Arabidopsis thaliana
• Alignment Length: 328
• Identity: 131/328 - (39%)
• Similarity: 184/328 - (56%)
• Gaps: 43/328 - (13%)

  Fly    29 DDVFSVQAFKEKLHIKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSII 93
            ||...:..|.:...:.:|...:..:|||:||:..|.||||||:::::|||||||||.|..|||:|
plant    62 DDNVKLGNFYDNFKVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 126

  Fly    94 QDEVLAHRMGLLPLRADPRLFAYRTEESTEAGTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYKN 158
            .||||||||||:|:.||||||.|.:|.  :...|::|:.|:|.|||.:.|             ..
plant   127 IDEVLAHRMGLIPIAADPRLFEYLSEH--DQANEKNTIVFKLHVKCPKNR-------------PR 176

  Fly   159 HKVYSGHLKWLPKGKQAQIYSE---------SAVNCIHD---------------DILIAQLRPGH 199
            .||.:..|||||.|.:....||         ::.:|..|               |||||:|.||.
plant   177 LKVLTSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQ 241

  Fly   200 ELDLRLVAVKGLGRDHAKFSPVATATYRLLPMIKLNREVTGKDAYLLQNCFSPGVIGIDE----N 260
            |::|...||||:|:.|||:|||.||.||:.|.:.|..||..:.|..|.|.....|..|::    .
plant   242 EIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGK 306

  Fly   261 ETAYVKDARYDTCSRNVYRYPQLNDAVTLARIRDHYIFSVESVGALKPDVIFLEAVKVLKRKCRA 325
            :.|.|...|..|..:...|...|.|.|.|..:::|:||::||.|:|.|:|:|.||||:|:.||.|
plant   307 KRATVAQPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAKCEA 371

  Fly   326 LID 328
            :.|
plant   372 ITD 374

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr1C	NP_608885.1	RNAP_I_II_AC40	41..329	CDD:132910	128/316 (41%)
ATRPAC42	NP_176282.1	RNAP_I_II_AC40	74..375	CDD:132910	128/316 (41%)