DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3756 and ATRPAC42

DIOPT Version :9

Sequence 1:NP_608885.1 Gene:CG3756 / 33712 FlyBaseID:FBgn0031657 Length:333 Species:Drosophila melanogaster
Sequence 2:NP_001320360.1 Gene:ATRPAC42 / 842377 AraportID:AT1G60850 Length:375 Species:Arabidopsis thaliana


Alignment Length:328 Identity:131/328 - (39%)
Similarity:184/328 - (56%) Gaps:43/328 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 DDVFSVQAFKEKLHIKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSII 93
            ||...:..|.:...:.:|...:..:|||:||:..|.||||||:::::|||||||||.|..|||:|
plant    62 DDNVKLGNFYDNFKVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 126

  Fly    94 QDEVLAHRMGLLPLRADPRLFAYRTEESTEAGTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYKN 158
            .||||||||||:|:.||||||.|.:|.  :...|::|:.|:|.|||.:.|             ..
plant   127 IDEVLAHRMGLIPIAADPRLFEYLSEH--DQANEKNTIVFKLHVKCPKNR-------------PR 176

  Fly   159 HKVYSGHLKWLPKGKQAQIYSE---------SAVNCIHD---------------DILIAQLRPGH 199
            .||.:..|||||.|.:....||         ::.:|..|               |||||:|.||.
plant   177 LKVLTSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQ 241

  Fly   200 ELDLRLVAVKGLGRDHAKFSPVATATYRLLPMIKLNREVTGKDAYLLQNCFSPGVIGIDE----N 260
            |::|...||||:|:.|||:|||.||.||:.|.:.|..||..:.|..|.|.....|..|::    .
plant   242 EIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGK 306

  Fly   261 ETAYVKDARYDTCSRNVYRYPQLNDAVTLARIRDHYIFSVESVGALKPDVIFLEAVKVLKRKCRA 325
            :.|.|...|..|..:...|...|.|.|.|..:::|:||::||.|:|.|:|:|.||||:|:.||.|
plant   307 KRATVAQPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAKCEA 371

  Fly   326 LID 328
            :.|
plant   372 ITD 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3756NP_608885.1 RNAP_I_II_AC40 41..329 CDD:132910 128/316 (41%)
RPOLD 53..327 CDD:214766 126/301 (42%)
ATRPAC42NP_001320360.1 RNAP_I_II_AC40 74..375 CDD:132910 128/316 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 206 1.000 Domainoid score I824
eggNOG 1 0.900 - - E1_COG0202
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3586
Inparanoid 1 1.050 217 1.000 Inparanoid score I1218
OMA 1 1.010 - - QHG54254
OrthoDB 1 1.010 - - D834009at2759
OrthoFinder 1 1.000 - - FOG0003669
OrthoInspector 1 1.000 - - otm2888
orthoMCL 1 0.900 - - OOG6_102180
Panther 1 1.100 - - LDO PTHR11800
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2540
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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