Protein Alignment Polr1C and polr1c

DIOPT Version :10

• Sequence 1: NP_608885.1
• Gene: Polr1C / 33712
• FlyBaseID: FBgn0031657
• Length: 333
• Species: Drosophila melanogaster
• Sequence 2: NP_956860.1
• Gene: polr1c / 393538
• ZFINID: ZDB-GENE-040426-1495
• Length: 347
• Species: Danio rerio
• Alignment Length: 314
• Identity: 170/314 - (54%)
• Similarity: 231/314 - (73%)
• Gaps: 4/314 - (1%)

  Fly    22 PQDYGLADDVFSVQAFKEKLHIKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYI 86
            |.:|...||.:..:.||:...|:|:.:||:.||||:||:..||||||||::|::||:||||||:|
Zfish    31 PGNYPGYDDTWDFEKFKKNFRIEIISSDENTLEFDMIGIDAAIANAFRRILLAEVPTMAIEKVFI 95

  Fly    87 YNNTSIIQDEVLAHRMGLLPLRADPRLFAYRTEESTEAGTEQDTLEFELKVKCSRRRDAGKDQSN 151
            ||||||||||:||||:||:|::||||||.||..|..| |||.||::.:|||||:|...|.||.|:
Zfish    96 YNNTSIIQDEILAHRLGLVPIKADPRLFEYRNSEDQE-GTEIDTIQLQLKVKCTRNPRAPKDSSD 159

  Fly   152 FDDIYKNHKVYSGHLKWLPKGKQAQIYSESAVNCIHDDILIAQLRPGHELDLRLVAVKGLGRDHA 216
            ..::|.||.:|||.:||||.|.||.:::::.:..:|.|||:||:|||.|||:.:..|||:|:|||
Zfish   160 PKELYLNHMIYSGDIKWLPIGNQADVFADAKIGPVHGDILLAQVRPGQELDIVMHCVKGIGKDHA 224

  Fly   217 KFSPVATATYRLLPMIKLNREVTGKDAYLLQNCFSPGVI---GIDENETAYVKDARYDTCSRNVY 278
            ||||||||:|||||.|.|.:.:.|:.|..|:.|||||||   .::..:.|.|.::|.|||||.|.
Zfish   225 KFSPVATASYRLLPEITLLQTIEGEQAERLKRCFSPGVIELENVNGRKVAKVVNSRLDTCSREVL 289

  Fly   279 RYPQLNDAVTLARIRDHYIFSVESVGALKPDVIFLEAVKVLKRKCRALIDEIEA 332
            |:..|...|.|.|:|||:||||||.|.|.|||:..||:.||..||:..:.|:||
Zfish   290 RHDDLKSLVKLGRVRDHFIFSVESTGILPPDVLVTEAINVLMSKCQKFLTELEA 343

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr1C	NP_608885.1	RNAP_I_II_AC40	41..329	CDD:132910	161/290 (56%)
polr1c	NP_956860.1	RNAP_I_II_AC40	50..340	CDD:132910	161/290 (56%)