Protein Alignment CG3756 and polr2c

DIOPT Version :9

• Sequence 1: NP_608885.1
• Gene: CG3756 / 33712
• FlyBaseID: FBgn0031657
• Length: 333
• Species: Drosophila melanogaster
• Sequence 2: NP_001161428.1
• Gene: polr2c / 334669
• ZFINID: ZDB-GENE-030131-6609
• Length: 275
• Species: Danio rerio
• Alignment Length: 306
• Identity: 81/306 - (26%)
• Similarity: 146/306 - (47%)
• Gaps: 63/306 - (20%)

  Fly    43 IKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLPL 107
            :||....::.::|.:.....|:||:.||:.:|:||::||:.|.|..|:|::.||.:|||:||:||
Zfish     9 VKITELSDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWVQIDANSSVLHDEFVAHRVGLIPL 73

  Fly   108 RADPRL--FAYRTEESTEAGTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWLP 170
            .:|..:  ..|..:.:.:....:.::|..|.|:|:  .|..:..::.|.:..|.:|       :|
Zfish    74 TSDDIVDKMQYSRDCTCDDFCPECSVELTLDVRCT--EDQTRHVTSRDLLSNNPRV-------IP 129

  Fly   171 KGKQAQIYSESAVN-----CIHDDILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLP 230
                  :.|.|..|     ...||||:.:||.|.||.||..|.||.|::|||::|.|...:...|
Zfish   130 ------VTSRSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDP 188

  Fly   231 MIKLNREVTGKDAYLLQNCFSPGVIGIDE----NETAYVKD----ARYDTCSRNVYRYPQLNDAV 287
                            .|.....|..|.:    :|.:.:::    |:||...:
Zfish   189 ----------------DNALRHTVYPIPQEWPKSEYSEIEEDGVQAQYDPNGK------------ 225

  Fly   288 TLARIRDHYIFSVESVGALKPDVIFLEAVKVLKRKCRALIDEIEAE 333
                 .:.:.::|||.|:|:|:.|.:.|:.:||:|...|..::..|
Zfish   226 -----PERFYYNVESCGSLRPETIVMSALAMLKKKLSDLQTQLSHE 266

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG3756	NP_608885.1	RNAP_I_II_AC40	41..329	CDD:132910	80/300 (27%)
		RPOLD	53..327	CDD:214766	77/288 (27%)
polr2c	NP_001161428.1	RNAP_II_RPB3	7..266	CDD:132909	80/304 (26%)
		RPOLD	19..260	CDD:214766	77/288 (27%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0202
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D834009at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	3	2.820