Protein Alignment Polr1C and rpc40

DIOPT Version :10

• Sequence 1: NP_608885.1
• Gene: Polr1C / 33712
• FlyBaseID: FBgn0031657
• Length: 333
• Species: Drosophila melanogaster
• Sequence 2: NP_596831.1
• Gene: rpc40 / 2539663
• PomBaseID: SPBC1289.07C
• Length: 348
• Species: Schizosaccharomyces pombe
• Alignment Length: 319
• Identity: 141/319 - (44%)
• Similarity: 213/319 - (66%)
• Gaps: 11/319 - (3%)

  Fly    22 PQDYGLADDVFSVQAFKEKLHIKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYI 86
            |..|...|:::.:..||:.|.:.|...|::.:.|::.|:..:|||||||::::::|::|.|.|||
pombe    27 PGYYFDEDNIWDLDKFKKNLKVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYI 91

  Fly    87 YNNTSIIQDEVLAHRMGLLPLRADPRLFAY-----RTEESTEAGTEQDTLEFELKVKCSRRRDAG 146
            .|||||||||||:||:||:|:.|||.:|.:     ..:|:|.  |:.||:.|.|..||...::|.
pombe    92 INNTSIIQDEVLSHRIGLVPISADPDMFKWFQHPLPGQEATH--TDYDTVVFSLNKKCEFNKNAA 154

  Fly   147 KDQSNFDDIYKNHKVYSGHLKWLPKGKQAQIYSESAVNCIHDDILIAQLRPGHELDLRLVAVKGL 211
            .|:.:...:|.|.:||||.|.|.|:|:|.:.::::.:..::.||::|:||||.|:||...|:.|:
pombe   155 TDEKDPKRLYVNSEVYSGDLIWKPQGRQEERFADNPIRVVNPDIVVAKLRPGQEIDLEAHAILGI 219

  Fly   212 GRDHAKFSPVATATYRLLPMIKLNREVTGKDAYLLQNCFSPGVI----GIDENETAYVKDARYDT 272
            |:|||||||||||:|||||.|.:...:.|:||...|.||..|||    |.|..:.|.|.|.|.||
pombe   220 GQDHAKFSPVATASYRLLPTIHILSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQARVADVRKDT 284

  Fly   273 CSRNVYRYPQLNDAVTLARIRDHYIFSVESVGALKPDVIFLEAVKVLKRKCRALIDEIE 331
            .||...|:|:..|.|.|.|:||||:|||||.|.:||||:|::::.|||.||.|:...::
pombe   285 VSRECLRHPEFADKVQLGRVRDHYLFSVESTGIMKPDVLFIKSIAVLKSKCLAVKSSLQ 343

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr1C	NP_608885.1	RNAP_I_II_AC40	41..329	CDD:132910	136/296 (46%)
rpc40	NP_596831.1	RNAP_I_II_AC40	46..341	CDD:132910	136/296 (46%)