Protein Alignment Polr1C and rpac-40

DIOPT Version :10

• Sequence 1: NP_608885.1
• Gene: Polr1C / 33712
• FlyBaseID: FBgn0031657
• Length: 333
• Species: Drosophila melanogaster
• Sequence 2: NP_504166.2
• Gene: rpac-40 / 178823
• WormBaseID: WBGene00019275
• Length: 366
• Species: Caenorhabditis elegans
• Alignment Length: 359
• Identity: 155/359 - (43%)
• Similarity: 225/359 - (62%)
• Gaps: 28/359 - (7%)

  Fly     2 ASKNRKEPLLYMEEYRVKQDP--------QDYGLADDV--FSVQAFKEKLHIKIVRNDEDG--LE 54
            |:...|:...:.:|..:|::.        .||...||.  |.:..:.:::.:.:|...:||  ||
 Worm     5 AAATSKQATYHSDEIEMKEEVVLNTYDECTDYVEYDDTKQFDINEYCDQIQVAMVNESDDGMTLE 69

  Fly    55 FDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLPLRADPRLFAYRTE 119
            ||:..:...||||.||:::::||:||:||:|:|.|||:||||||.||:||||||.|||.|.:..|
 Worm    70 FDITRIEAPIANALRRVLIAEVPTMALEKIYLYQNTSVIQDEVLCHRLGLLPLRVDPRGFQFPKE 134

  Fly   120 E---STEAGTEQD---------TLEFELKVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWLPKG 172
            :   ..|.|.:.|         .|.|::.|.|::.|:|....::...:|.|..|||...:|:|..
 Worm   135 KVVGINEKGVDCDEEPEGDPAKNLIFKINVSCTKNRNAVPTATDPKQLYHNSSVYSRAFEWVPIA 199

  Fly   173 KQAQIYSESA-VNCIHDDILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPMIKLNR 236
            .|...::|.| ...:.||||:|:||||.|::....||||:|||||||||||||:|||||.|:||.
 Worm   200 DQKTQFTEEAHPRMVSDDILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNA 264

  Fly   237 EVTGKDAYLLQNCFSPGVIGIDE---NETAYVKDARYDTCSRNVYRYPQLNDAVTLARIRDHYIF 298
            |::|:.|..|::.||.|||.|::   ...|.|||||.|||||||:|:..|:..|.|.:.:.|:||
 Worm   265 EISGEAAERLKSVFSEGVIAIEKKGAKRIAVVKDARKDTCSRNVFRHEDLSKVVQLGKNKQHFIF 329

  Fly   299 SVESVGALKPDVIFLEAVKVLKRKCRALIDEIEA 332
            ||||.||||...:.:||.||::.|||:|..:|||
 Worm   330 SVESTGALKSSELVVEACKVMEIKCRSLRKQIEA 363

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr1C	NP_608885.1	RNAP_I_II_AC40	41..329	CDD:132910	143/305 (47%)
rpac-40	NP_504166.2	RNAP_I_II_AC40	54..358	CDD:132910	142/303 (47%)