Protein Alignment CG3756 and rpb-3

DIOPT Version :9

• Sequence 1: NP_608885.1
• Gene: CG3756 / 33712
• FlyBaseID: FBgn0031657
• Length: 333
• Species: Drosophila melanogaster
• Sequence 2: NP_492361.2
• Gene: rpb-3 / 172680
• WormBaseID: WBGene00007971
• Length: 282
• Species: Caenorhabditis elegans
• Alignment Length: 315
• Identity: 80/315 - (25%)
• Similarity: 141/315 - (44%)
• Gaps: 69/315 - (21%)

  Fly    42 HIKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLP 106
            :|::.....|.::|.|.....::||:.||:.:::||::||:.|.|..|||::.||.:||||||:|
 Worm     8 NIEVTELTNDIIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDEFIAHRMGLIP 72

  Fly   107 LRADPRLFAYRTEESTEAG--TEQDTLEFELKVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWL 169
            ..:|..:...:.....|..  .::.::.|.|::||       ||::..       .|.:.||..:
 Worm    73 FISDYHVEKMQYTRDCECAEFCDECSIPFILQMKC-------KDEATL-------AVTTEHLMPM 123

  Fly   170 --------PKGKQAQIYSESAVNCIH--DDILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATA 224
                    |...:|.....|..:..|  ::|||.:||.|.||:|:....||.|::|||::|....
 Worm   124 HNLDTTVRPACGKALRERGSTRDEFHNREEILIVKLRKGQELNLKAYVKKGFGKEHAKWNPTCGV 188

  Fly   225 TYRLLPMIKLNREVTGKDAYLLQNCFSPGV--------IGIDENETAYVKDARYDTCSRNVYRYP 281
            .:...|            ...|::...|.|        ..:.|:.|.  |:|.::..::
 Worm   189 AFEYDP------------DNALRHTIYPNVEEWPRSDHSSLPEDSTE--KEAPFEPDNK------ 233

  Fly   282 QLNDAVTLARIRDHYIFSVESVGALKPDVIFLEAVKVLKRKCR----ALIDEIEA 332
                       .:.:.||:|..|||....|....:.:||||..    ||.:|::|
 Worm   234 -----------PNKFWFSIEGTGALPAQRIVTMGIGILKRKLEELNMALSNELQA 277

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG3756	NP_608885.1	RNAP_I_II_AC40	41..329	CDD:132910	78/310 (25%)
		RPOLD	53..327	CDD:214766	75/297 (25%)
rpb-3	NP_492361.2	RNAP_II_RPB3	7..274	CDD:132909	78/310 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0202
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D834009at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.820