Protein Alignment Polr1C and polr1c

DIOPT Version :10

• Sequence 1: NP_608885.1
• Gene: Polr1C / 33712
• FlyBaseID: FBgn0031657
• Length: 333
• Species: Drosophila melanogaster
• Sequence 2: XP_031757702.1
• Gene: polr1c / 100379802
• XenbaseID: XB-GENE-1009901
• Length: 363
• Species: Xenopus tropicalis
• Alignment Length: 314
• Identity: 171/314 - (54%)
• Similarity: 229/314 - (72%)
• Gaps: 4/314 - (1%)

  Fly    22 PQDYGLADDVFSVQAFKEKLHIKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYI 86
            |.:|...:|.::...|:....|.||:.:.|.||||::|:..||||||||::|::||:||:||||:
 Frog    45 PGNYMGYNDTWNYGRFENNFRIDIVKMEGDTLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVYV 109

  Fly    87 YNNTSIIQDEVLAHRMGLLPLRADPRLFAYRTEESTEAGTEQDTLEFELKVKCSRRRDAGKDQSN 151
            ||||||||||:||||:||:|:|.|||||.||:......|||.|||:|||.|||:|...|.||.|:
 Frog   110 YNNTSIIQDEILAHRLGLIPIRVDPRLFEYRSAAEEGEGTEIDTLQFELNVKCTRNPRASKDCSD 174

  Fly   152 FDDIYKNHKVYSGHLKWLPKGKQAQIYSES-AVNCIHDDILIAQLRPGHELDLRLVAVKGLGRDH 215
            .:::|.|||||:.|:||||:|.|:.::.|: ....:|.||||||||||.|:.:.:..|||:|:||
 Frog   175 PNELYLNHKVYTSHMKWLPQGNQSDLFPETDPPRPVHGDILIAQLRPGQEISVIMHCVKGIGKDH 239

  Fly   216 AKFSPVATATYRLLPMIKLNREVTGKDAYLLQNCFSPGVIGIDE---NETAYVKDARYDTCSRNV 277
            |||||||||:|||||.|.|...:.|:.|..||.||||||||:||   ...|.|.:||.|||.|.:
 Frog   240 AKFSPVATASYRLLPEITLLCPIEGELADRLQRCFSPGVIGVDEVDGKRVARVINARTDTCGREI 304

  Fly   278 YRYPQLNDAVTLARIRDHYIFSVESVGALKPDVIFLEAVKVLKRKCRALIDEIE 331
            :|:..|.|.|.:||:||:|||||||.|.|.||::..||:|||..|||..:||::
 Frog   305 FRHDDLKDLVRMARVRDYYIFSVESTGILPPDILVSEAIKVLMGKCRRFLDELD 358

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr1C	NP_608885.1	RNAP_I_II_AC40	41..329	CDD:132910	165/291 (57%)
polr1c	XP_031757702.1	RNAP_I_II_AC40	64..356	CDD:132910	165/291 (57%)