DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scox and HCC1

DIOPT Version :9

Sequence 1:NP_608884.1 Gene:Scox / 33711 FlyBaseID:FBgn0262467 Length:251 Species:Drosophila melanogaster
Sequence 2:NP_566339.1 Gene:HCC1 / 820046 AraportID:AT3G08950 Length:334 Species:Arabidopsis thaliana


Alignment Length:223 Identity:96/223 - (43%)
Similarity:144/223 - (64%) Gaps:13/223 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 DSTKGK----GPISWRSLAVIGALGAGGVGFMLYVKS------EKDEARMKERQRQLGKAAIGGS 83
            :...||    ||:||.|..::.|.|||.|.:....|.      .|:...:||.. ..|||||||.
plant   113 ERASGKDVRGGPVSWMSFFLLFATGAGLVYYYDTQKKRHIEDINKNSIAVKEGP-SAGKAAIGGP 176

  Fly    84 WELVDSQGAVRKSEDFLGKWLLIYFGFTHCPDICPDELEKMAAVVDEVEKSPQTPAVQPIFITVD 148
            :.|:...|.....::.:|||.::|||||||||||||||.|:||.:|:::::.....| |:||:||
plant   177 FSLIRDDGKRVTEKNLMGKWTILYFGFTHCPDICPDELIKLAAAIDKIKENSGVDVV-PVFISVD 240

  Fly   149 PERDSKEVVAKYVKEFSPKLLGLTGTVEQIRKVCKAFRVYFSAGPRDEDNDYIVDHTIIMYLVNP 213
            ||||:.:.|.:|||||.|||:||||:.|:|:.|.:::|||:.. ..:||:||:|||:|:|||::|
plant   241 PERDTVQQVHEYVKEFHPKLIGLTGSPEEIKSVARSYRVYYMK-TEEEDSDYLVDHSIVMYLMSP 304

  Fly   214 DGEFVDYYGQNRDKDQCVASILVNIAKW 241
            :..||.:||:|.|.|.....::..|.::
plant   305 EMNFVKFYGKNHDVDSLTDGVVKEIRQY 332

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScoxNP_608884.1 SCO1-SenC 81..217 CDD:396962 67/135 (50%)
HCC1NP_566339.1 SCO 173..313 CDD:239266 70/141 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 154 1.000 Domainoid score I1357
eggNOG 1 0.900 - - E1_COG1999
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3374
Inparanoid 1 1.050 190 1.000 Inparanoid score I1388
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1462537at2759
OrthoFinder 1 1.000 - - FOG0002408
OrthoInspector 1 1.000 - - oto4001
orthoMCL 1 0.900 - - OOG6_100983
Panther 1 1.100 - - LDO PTHR12151
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1597
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.830

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