DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scox and Sco1

DIOPT Version :9

Sequence 1:NP_608884.1 Gene:Scox / 33711 FlyBaseID:FBgn0262467 Length:251 Species:Drosophila melanogaster
Sequence 2:NP_001166845.1 Gene:Sco1 / 497930 RGDID:1559538 Length:284 Species:Rattus norvegicus


Alignment Length:226 Identity:122/226 - (53%)
Similarity:159/226 - (70%) Gaps:7/226 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 PADSTKGK-----GPISWRSLAVIGALGAGGVGFMLYVKSEKDEARMKERQRQLGKAAIGGSWEL 86
            |..|..|.     ||:||:|||:..|:|...:..|.|.|.||.|...|:|.|.:||..:||.:.|
  Rat    61 PKGSQAGSHRPKLGPVSWKSLALTFAIGGSLLAGMKYFKKEKIEKLEKQRHRSIGKPLLGGPFSL 125

  Fly    87 VDSQGAVRKSEDFLGKWLLIYFGFTHCPDICPDELEKMAAVVDEVEKSPQTPAVQPIFITVDPER 151
            ....|..:..:||||:|:||||||||||||||:|||||..||:|::..|..|.:.|:|||:||||
  Rat   126 TTHNGEPKTDKDFLGQWVLIYFGFTHCPDICPEELEKMIEVVEEIDSIPSLPNLTPLFITIDPER 190

  Fly   152 DSKEVVAKYVKEFSPKLLGLTGTVEQIRKVCKAFRVYFSAGPRDEDNDYIVDHTIIMYLVNPDGE 216
            |:||.:|.|||||||||:|||||.|:|..|.:|:|||:|.||:|||.||||||||||||:.||||
  Rat   191 DTKEAIATYVKEFSPKLVGLTGTKEEIDGVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGE 255

  Fly   217 FVDYYGQNRDKDQCVASILVNIAKWNSMNKK 247
            |:||:|||:.|.:...||..::.  :.|.|:
  Rat   256 FLDYFGQNKKKAEIAGSIAAHMR--SHMRKR 284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScoxNP_608884.1 SCO1-SenC 81..217 CDD:396962 87/135 (64%)
Sco1NP_001166845.1 SCO 119..261 CDD:239266 91/141 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341859
Domainoid 1 1.000 201 1.000 Domainoid score I2933
eggNOG 1 0.900 - - E1_COG1999
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3374
Inparanoid 1 1.050 258 1.000 Inparanoid score I3068
OMA 1 1.010 - - QHG51910
OrthoDB 1 1.010 - - D1462537at2759
OrthoFinder 1 1.000 - - FOG0002408
OrthoInspector 1 1.000 - - oto96355
orthoMCL 1 0.900 - - OOG6_100983
Panther 1 1.100 - - LDO PTHR12151
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1597
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1514.810

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