DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TNC and tnc

DIOPT Version :9

Sequence 1:XP_016870167.1 Gene:TNC / 3371 HGNCID:5318 Length:2384 Species:Homo sapiens
Sequence 2:XP_004916768.1 Gene:tnc / 100494697 XenbaseID:XB-GENE-1002816 Length:1829 Species:Xenopus tropicalis


Alignment Length:2386 Identity:1186/2386 - (49%)
Similarity:1498/2386 - (62%) Gaps:559/2386 - (23%)


- Green bases have known domain annotations that are detailed below.


Human     1 MGAMTQLLAG-VFLAFLALATEGGVLKKVIRHKRQSGVNATLPEENQPVVFNHVYNIKLPVGSQC 64
            ||...|:.|. :||  |:.....|:::|:||.||:||:|.:|||:||||||||||||.:|:||.|
 Frog     1 MGVPIQVYACLIFL--LSAEVNCGLVRKIIRQKRESGLNISLPEDNQPVVFNHVYNINVPMGSLC 63

Human    65 SVDLE-SASGEKDLAPPSEPSESFQEHTVDGENQIVFTHRINIPRRACGCAAAPDVKELLSRLEE 128
            ||||: :::.:.:|:|  |..:::|||.::|||||||||||||||||||||:|||:|:||:||||
 Frog    64 SVDLDPTSTKDNELSP--EVGKNYQEHNLNGENQIVFTHRINIPRRACGCASAPDIKDLLTRLEE 126

Human   129 LENLVSSLREQCTAGAGCCLQPATGRLDTRPFCSGRGNFSTEGCGCVCEPGWKGPNCSEPECPGN 193
            ||.||||||||||.||||| ..|.|.|:|:|:|:||||:|:|...|:|||||.|.||:|..|||.
 Frog   127 LEGLVSSLREQCTTGAGCC-SSAQGVLETKPYCNGRGNYSSEAKACICEPGWTGLNCTEIMCPGQ 190

Human   194 CHLRGRCIDGQCICDDGFTGEDCSQLACPSDCNDQGKCVNGVCICFEGYAGADCSREICPVPCSE 258
            |:.||.|::|.|:|..||.|||||::|||.|||||||||||.|:|||||.|.||..|:||:||. 
 Frog   191 CNNRGVCVNGACVCSPGFFGEDCSEVACPDDCNDQGKCVNGRCVCFEGYGGEDCKEEVCPLPCG- 254

Human   259 EHGTCVDGLCVCHDGFAGDDCNKPLCLNNCYNRGRCVENECVCDEGFTGEDCSELICPNDCFDRG 323
            |||.||:|.|||.:.|.|:||::|.|.|||.||||||:||||||:.:||||||||||||||||||
 Frog   255 EHGKCVNGQCVCDENFIGEDCSEPRCPNNCNNRGRCVDNECVCDDPYTGEDCSELICPNDCFDRG 319

Human   324 RCINGTCYCEEGFTGEDCGKPTCPHACHTQGRCEEGQCVCDEGFAGVDCSEKRCPADCHNRGRCV 388
            ||:||.|||||||||||||:..||:.|:..|||..|.|||:.|:.|.||||..||.:|:|||||:
 Frog   320 RCVNGVCYCEEGFTGEDCGQLACPNNCNNHGRCVNGLCVCETGYTGDDCSELACPDNCNNRGRCI 384

Human   389 DGRCECDDGFTGADCGELKCPNGCSGHGRCVNGQCVCDEGYTGEDCSQLRCPNDCHSRGRCVEGK 453
            :|:|.||:|:||.:||||:|||.|:..|||||||||||:.|.|.|||.|||||||::|||||.|:
 Frog   385 NGQCVCDEGYTGENCGELRCPNDCNNRGRCVNGQCVCDDAYIGSDCSDLRCPNDCNNRGRCVNGQ 449

Human   454 CVCEQGFKGYDCSDMSCPNDCHQHGRCVNGMCVCDDGYTGEDCRDRQCPRDCSNRGLCVDGQCVC 518
            |||::||.|.||.::.||:||:..||||||.||||:||||.||.:.:||.||:|||.|.:|||||
 Frog   450 CVCDEGFIGDDCGELRCPDDCNDRGRCVNGQCVCDEGYTGLDCGELRCPNDCNNRGRCENGQCVC 514

Human   519 EDGFTGPDCAELSCPNDCHGQGRCVNGQCVCHEGFMGKDCKEQRCPSDCHGQGRCVDGQCICHEG 583
            ::.|||.||:||.|||||:.:||||||||||...|||.||.|.|||.||:.:|||:||||:|.||
 Frog   515 DEEFTGEDCSELRCPNDCNNRGRCVNGQCVCDTLFMGDDCGELRCPDDCNNRGRCIDGQCVCDEG 579

Human   584 FTGLDCGQHSCPSDCNNLGQCVSGRCICNEGYSGEDCSEVSPPKDLVVTEVTEETVNLAWDNEMR 648
            |||.:|.:.:|..:|:|.|:|:.|:|:|:||::|:.||||||||||.|.:||.:|:||.|.|:||
 Frog   580 FTGDNCAELTCLDNCHNQGRCIDGQCVCDEGFTGDFCSEVSPPKDLKVIDVTTKTMNLEWQNKMR 644

Human   649 VTEYLVVYTPTHEGGLEMQFRVPGDQTSTIIQELEPGVEYFIRVFAILENKKSIPVSARVATYLP 713
            |.||||.|.||..||||:.||||||||:..|:|||||||||:||:|||.|:|||||||||:|:||
 Frog   645 VNEYLVSYVPTSPGGLELDFRVPGDQTAATIRELEPGVEYFVRVYAILRNQKSIPVSARVSTHLP 709

Human   714 APEGLKFKSIKETSVEVEWDPLDIAFETWEIIFRNMNKEDEGEITKSLRRPETSYRQTGLAPGQE 778
            ..:.|:|||::||.|:||||||||:|:||::|||| .||:.||||.||.||.||:.|||||||:.
 Frog   710 TTDDLRFKSVRETFVDVEWDPLDISFDTWQLIFRN-TKEENGEITTSLERPVTSFVQTGLAPGET 773

Human   779 YEISLHIVKNNTRGPGLKRVTTTRLDAPSQIEVKDVTDTTALITWFKPLAEIDGIELTYGIKDVP 843
            ||:|:.:|||.|:||.|.:|||||||||||:||.|||||:|||||.|||||||||.|:||.::.|
 Frog   774 YEVSIQVVKNKTQGPPLTKVTTTRLDAPSQVEVNDVTDTSALITWVKPLAEIDGISLSYGTENEP 838

Human   844 GDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGDMSSNPAKETFTTGLDAPRNLRRVSQTDNS 908
              .||::|||||.|||:..|:|||||||:|||||.:|:|:||.|||||.||.|:||||||.||:|
 Frog   839 --ITTVELTEDETQYSMNGLRPDTEYEVTLISRRREMTSSPATETFTTDLDTPKNLRRVSNTDSS 901

Human   909 ITLEWRNGKAAIDSYRIKYAPISGGDHAEVDVPKSQQATTKTTLTGLRPGTEYGIGVSAVKEDKE 973
            |||:|:|.:|.::.|||||||:|||||.|..||:|.:||:||||||||||||||||::|||:|||
 Frog   902 ITLDWKNSQANVEYYRIKYAPLSGGDHEETIVPRSNEATSKTTLTGLRPGTEYGIGLTAVKQDKE 966

Human   974 SNPATINAATELDTPKDLQVSETAETSLTLLWKTPLAKFDRYRLNYSLPTGQWVGVQLPRNTTSY 1038
            |.||||||||:||.||||:|:...||:|.|.||.|:||||.|||.|:..||: ..||:|.|..::
 Frog   967 SLPATINAATDLDAPKDLEVTGATETTLDLRWKLPVAKFDHYRLTYTSTTGE-KEVQVPGNAITH 1030

Human  1039 VLRGLEPGQEYNVLLTAEKGRHKSKPARVKASTEQAPELENLTVTEVGWDGLRLNWTAADQAYEH 1103
            .|.|||||:||::.|.|||||||||||.|...||:..||                          
 Frog  1031 KLSGLEPGKEYSLSLVAEKGRHKSKPASVVGRTEEPREL-------------------------- 1069

Human  1104 FIIQVQEANKVEAARNLTVPGSLRAVDIPGLKAATPYTVSIYGVIQGYRTPVLSAEASTGETPNL 1168
                                                                             
 Frog  1070 ----------------------------------------------------------------- 1069

Human  1169 GEVVVAEVGWDALKLNWTAPEGAYEYFFIQVQEADTVEAAQNLTVPGGLRSTDLPGLKAATHYTI 1233
                                                                             
 Frog  1070 ----------------------------------------------------------------- 1069

Human  1234 TIRGVTQDFSTTPLSVEVLTEEVPDMGNLTVTEVSWDALRLNWTTPDGTYDQFTIQVQEADQVEE 1298
                                      |:|.|:::|||:.:|.|..|||.|::|.|||::::..||
 Frog  1070 --------------------------GSLLVSQISWDSFKLTWIAPDGNYEKFVIQVEDSEHREE 1108

Human  1299 AHNLTVPGSLRSMEIPGLRAGTPYTVTLHGEVRGHSTRPLAVEVVTEDLPQLGDLAVSEVGWDGL 1363
            ..|:.:||.||.:|:|||:..|.|.:||||.::|.:|:||..|.:||::|::||||         
 Frog  1109 PKNIIIPGELRYLEVPGLKPETKYQITLHGVIQGSNTKPLFGEAITENIPEVGDLA--------- 1164

Human  1364 RLNWTAADNAYEHFVIQVQEVNKVEAAQNLTLPGSLRAVDIPGLEAATPYRVSIYGVIRGYRTPV 1428
                                                                             
 Frog  1165 ----------------------------------------------------------------- 1164

Human  1429 LSAEASTAKEPEIGNLNVSDITPESFNLSWMATDGIFETFTIEIIDSNRLLETVEYNISGAERTA 1493
                             |||:|..||:|||.||...||.|.||:||:|||.|.:..|:||..||:
 Frog  1165 -----------------VSDVTTNSFDLSWKATSDSFEEFVIEVIDTNRLFEPITLNVSGNLRTS 1212

Human  1494 HISGLPPSTDFIVYLSGLAPSIRTKTISATATTVAKPLLSHLTVSNMTWGSVSISWEAQESAFDS 1558
            .:|||.|.||:.:.|.|:...:||:.||.:||                                 
 Frog  1213 SVSGLLPKTDYSISLFGIVHGLRTQAISTSAT--------------------------------- 1244

Human  1559 FLIEVSNSDHPHETMVLSVPGVSRSSVITNLKASSNYTAHLHGLIGGQRAQTLMVQATTEPKPQL 1623
                                                                             
 Frog  1245 ----------------------------------------------------------------- 1244

Human  1624 GTLIFSNITPKSFNMSWTTQAGLFAKIVINVSDAHSLHESQQFTVSGDAKQAHITGLVENTGYDV 1688
                                                                             
 Frog  1245 ----------------------------------------------------------------- 1244

Human  1689 SVAGTTLAGDPTRPLTAFVITEALPLLENLTISDINPYGFTVSWMASENAFDSFLVTVVDSGKLL 1753
                                                                             
 Frog  1245 ----------------------------------------------------------------- 1244

Human  1754 DPQEFTLSGTQRKLELRGLITGIGYEVMVSGFTQGHQTKPLRAEIVTEAEPEVDNLLVSDATPDG 1818
                                                          ||.||||.|||||..|.|.
 Frog  1245 ----------------------------------------------TEPEPEVGNLLVSKITSDS 1263

Human  1819 FRLSWTADEGVFDNFVLKIRDTKKQSEPLEITLLAPERTRDITGLREATEYEIELYGISKGRRSQ 1883
            |.|||.|||..||||:|||||.|:|.||:.:|:...||:..:||||:.|||:|||.|::.|:||.
 Frog  1264 FHLSWNADESGFDNFILKIRDAKQQFEPITLTVPGSERSSLVTGLRDGTEYDIELVGVASGQRSP 1328

Human  1884 TVSAIATTAMGSPKEVIFSDITENSATVSWRAPTAQVESFRITYVPITGGTPSMVTVDGTKTQTR 1948
            .:..:||||:||||.:.|||||||||.|:|.||..:||.|.|||:|::||:|:.|.|||:|||:.
 Frog  1329 PIKGMATTALGSPKGLSFSDITENSAKVTWVAPRIRVEKFLITYIPVSGGSPNTVEVDGSKTQST 1393

Human  1949 LVKLIPGVEYLVSIIAMKGFEESEPVSGSFTTALDGPSGLVTANITDSEALARWQPAIATVDSYV 2013
            ||.|.|||||:|||::::|.|||||.||:||||||.||||...|||:|:|||.|||::|:||:||
 Frog  1394 LVNLHPGVEYIVSIVSVQGSEESEPASGTFTTALDSPSGLKVVNITESDALALWQPSLASVDNYV 1458

Human  2014 ISYTGEKVPEITRTVSGNTVEYALTDLEPATEYTLRIFAEKGPQKSSTITAKFTTDLDSPRDLTA 2078
            .||:.:..|.:|.::||||||..|..|.|:||||::::|.:|..:|:.|:.||||.||.||||:|
 Frog  1459 FSYSAKNAPAVTHSISGNTVENDLIGLHPSTEYTVKVYAVRGQHRSAEISTKFTTALDGPRDLSA 1523

Human  2079 TEVQSETALLTWRPPRASVTGYLLVYESVDGTVKEVIVGPDTTSYSLADLSPSTHYTAKIQALNG 2143
            :|:|||:|||||:|||:::|||:|:|||||||||||:||||||||.|.|||||..|.|::||:||
 Frog  1524 SEIQSESALLTWKPPRSTITGYVLIYESVDGTVKEVVVGPDTTSYRLLDLSPSAQYIARVQAING 1588

Human  2144 PLRSNMIQTIFTTIGLLYPFPKDCSQAMLNGDTTSGLYTIYLNGDKAEALEVFCDMTSDGGGWIV 2208
            ..||..|||||.|||||||:|||||||:|||:..|||||||:|||:::.:||:|||:.|||||||
 Frog  1589 DRRSKEIQTIFITIGLLYPYPKDCSQALLNGEADSGLYTIYVNGDQSQPMEVYCDMSVDGGGWIV 1653

Human  2209 FLRRKNGRENFYQNWKAYAAGFGDRREEFWLGLDNLNKITAQGQYELRVDLRDHGETAFAVYDKF 2273
            ||||.:|.|.||:|||.|:||||:...||::||:||:|:|:.|||||||||||:.|||:||||||
 Frog  1654 FLRRTDGSEEFYRNWKTYSAGFGNINNEFFMGLENLHKLTSLGQYELRVDLRDNDETAYAVYDKF 1718

Human  2274 SVGDAKTRYKLKVEGYSGTAGDSMAYHNGRSFSTFDKDTDSAITNCALSYKGAFWYRNCHRVNLM 2338
            ||||||:|::||||||||||||||.|||||||||||||.|||||||||||||||||:||||||||
 Frog  1719 SVGDAKSRFRLKVEGYSGTAGDSMTYHNGRSFSTFDKDNDSAITNCALSYKGAFWYKNCHRVNLM 1783

Human  2339 GRYGDNNHSQGVNWFHWKGHEHSIQFAEMKLRPSNFRNLEGRRKRA 2384
            |||||.|||||||||||||||:||||||||:||.:|||||||||||
 Frog  1784 GRYGDTNHSQGVNWFHWKGHEYSIQFAEMKIRPVSFRNLEGRRKRA 1829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TNCXP_016870167.1 EGF_2 377..403 CDD:285248 15/25 (60%)
EGF_2 408..434 CDD:285248 17/25 (68%)
EGF_2 468..496 CDD:285248 18/27 (67%)
EGF_2 504..527 CDD:285248 14/22 (64%)
EGF_2 533..558 CDD:285248 17/24 (71%)
fn3 624..695 CDD:306538 48/70 (69%)
fn3 713..793 CDD:306538 49/79 (62%)
fn3 804..884 CDD:306538 55/79 (70%)
fn3 894..976 CDD:306538 58/81 (72%)
fn3 986..1064 CDD:306538 44/77 (57%)
fn3 1075..1154 CDD:306538 2/78 (3%)
fn3 1169..1241 CDD:306538 0/71 (0%)
fn3 1260..1327 CDD:306538 30/66 (45%)
fn3 1348..1427 CDD:306538 5/78 (6%)
fn3 1439..1508 CDD:306538 33/68 (49%)
fn3 1533..1605 CDD:306538 0/71 (0%)
fn3 1619..1691 CDD:306538 0/71 (0%)
fn3 1716..1788 CDD:306538 0/71 (0%)
fn3 1804..1883 CDD:306538 46/78 (59%)
fn3 1894..1973 CDD:306538 49/78 (63%)
fn3 1985..2055 CDD:306538 37/69 (54%)
fn3 2071..2143 CDD:306538 51/71 (72%)
Fibrinogen_C 2163..2372 CDD:278572 164/208 (79%)
tncXP_004916768.1 EGF_Tenascin 187..214 CDD:376143 15/26 (58%)
EGF_Tenascin 249..276 CDD:376143 16/27 (59%)
EGF_Tenascin 280..307 CDD:376143 20/26 (77%)
DSL <295..337 CDD:366627 36/41 (88%)
EGF_Tenascin 342..369 CDD:376143 13/26 (50%)
EGF_Tenascin 373..399 CDD:376143 15/25 (60%)
EGF_Tenascin 404..431 CDD:376143 18/26 (69%)
EGF_Tenascin 435..461 CDD:376143 17/25 (68%)
EGF_Tenascin 466..492 CDD:376143 18/25 (72%)
EGF_Tenascin 497..524 CDD:376143 17/26 (65%)
EGF_Tenascin 528..554 CDD:376143 18/25 (72%)
EGF_Tenascin 559..586 CDD:376143 17/26 (65%)
EGF_Tenascin 590..617 CDD:376143 11/26 (42%)
fn3 620..691 CDD:365830 48/70 (69%)
fn3 713..789 CDD:365830 49/76 (64%)
fn3 799..877 CDD:365830 55/79 (70%)
fn3 887..969 CDD:365830 58/81 (72%)
fn3 979..1056 CDD:365830 44/77 (57%)
fn3 1074..1147 CDD:365830 33/72 (46%)
fn3 1158..1230 CDD:365830 39/162 (24%)
fn3 1249..1329 CDD:365830 47/79 (59%)
fn3 1339..1418 CDD:365830 49/78 (63%)
fn3 1428..1506 CDD:365830 40/77 (52%)
fn3 1518..1594 CDD:365830 54/75 (72%)
FReD 1607..1817 CDD:238040 165/209 (79%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 373 1.000 Domainoid score I6696
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H55636
Inparanoid 1 1.050 1786 1.000 Inparanoid score I925
NCBI 1 1.000 - -
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D10859at7742
OrthoFinder 1 1.000 - - FOG0009380
OrthoInspector 1 1.000 - - oto158549
Panther 1 1.100 - - LDO PTHR46708
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R8206
SonicParanoid 1 1.000 - - X8997
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.190

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