DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Marcal1 and CHR8

DIOPT Version :10

Sequence 1:NP_608883.1 Gene:Marcal1 / 33709 FlyBaseID:FBgn0031655 Length:755 Species:Drosophila melanogaster
Sequence 2:NP_001324142.1 Gene:CHR8 / 816391 AraportID:AT2G18760 Length:1246 Species:Arabidopsis thaliana


Alignment Length:987 Identity:192/987 - (19%)
Similarity:334/987 - (33%) Gaps:305/987 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 LAKLQAKKSQLLASAPATNGKSTTSATGATQHANNGKS-NPNQPQAKSPLNFYRSPT-GEQKKIN 79
            |..|:.:|.||.......:|:   ||:.:..|.|..:. ...:|..|..|...|.|: .:.||:.
plant   119 LRSLKKRKIQLEKELTGLHGQ---SASSSADHGNLLRDLVKEKPSLKRKLKEIRKPSRRDGKKVK 180

  Fly    80 RSGPTPGDNKSSSFLNALKAIKQTSNRELSR-GAAHPY----------QRPNGGNERNKP----- 128
            ........:..:.|..|.....:|...||.| |...|:          |:|...|.||.|     
plant   181 VVSFREDTDFDAVFDGASAGFVETERDELVRKGILTPFHKLDGFERRLQQPGPSNSRNLPEGDDE 245

  Fly   129 ------------TLSLSSDKEKPVAVLLGNSITCNLYLISTHRFAAQTSGYHEQLVTVFKN---- 177
                        ::||:: |.:|...||...        ...:....|:.: .:|..::|.    
plant   246 NEDSSIIDRAVQSMSLAA-KARPTTKLLDAE--------DLPKLEPPTAPF-RRLRKLYKTPNSP 300

  Fly   178 ------------------MPTKCY-----------DGQTRIWSFDLSDYQ--------------- 198
                              :|.|.:           .|..:....||.|.:               
plant   301 DNEAKKRKAGKKSKKTRPLPEKKWRKRISREDSSLQGSDKAVILDLPDVEISHVINAMLLSDKSQ 365

  Fly   199 ---------------SL-KTHAADLKPYVHMNGIPKKVL--DLCGQPPVVP-------ERSVL-- 236
                           || |..:.|:....:::|..:::|  ..|.:..:..       |||.:  
plant   366 QFLPMLSKFFFFPHLSLCKPTSYDVDSCCNVSGDGRRILTTSSCEEEELDDFDDADDNERSSVQL 430

  Fly   237 ---ASIEPKLADQLMPFQQDGV-------CFAIAQKGRIMICDEMGLGKTYQALA------VADY 285
               .:|...:..:|..:|:.||       |    |:...:|.||||||||.|.|:      .:..
plant   431 EGGLNIPECIFRKLFDYQRVGVQWLWELHC----QRAGGIIGDEMGLGKTIQVLSFLGSLHFSKM 491

  Fly   286 FKDDWPLLVCTTASTRDSWAKHIMDLLPKVPIHYVQVLNN------------------------- 325
            :|..  :::|.....| .|.:......|.   .:|::|::                         
plant   492 YKPS--IIICPVTLLR-QWRREAQKWYPD---FHVEILHDSAQDSGHGKGQGKASESDYDSESSV 550

  Fly   326 ------------------NQLYVGEAKVLITSYNMMERHEDKLMQRKFGFIIFDESHTLKNSKAK 372
                              |::...|:.:|||:|..:....:||:..::|:.:.||.|.::|..:.
plant   551 DSDHEPKSKNTKKWDSLLNRVLNSESGLLITTYEQLRLQGEKLLNIEWGYAVLDEGHRIRNPNSD 615

  Fly   373 CTTTAKRLTDQAKRVVLLSGTPALSRPLELFTQLQMI-DGKFMNFMEFTTRYCDGKQSTFGWDAN 436
            .|...|:|  |....::::|.|..::..||::....: .||......|...:  ....|.|..||
plant   616 ITLVCKQL--QTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEF--SVPITVGGYAN 676

  Fly   437 GQ----SNLEELKVILH---LKYMLRRTKVEVLPQLAEKNRETVVLDPALVWTNAETKETLDAFN 494
            ..    |......|:|.   :.|:|||.|.:|...|.:|....:...     ...|.:.|..|| 
plant   677 ASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHLTKKTEHVLFCS-----LTVEQRSTYRAF- 735

  Fly   495 KELKTAKGRATEEI---------------LLRFYARTAEV-------------------KTRAVC 525
                    .|:.|:               ::|......::                   |.:.|.
plant   736 --------LASSEVEQIFDGNRNSLYGIDVMRKICNHPDLLEREHSHQNPDYGNPERSGKMKVVA 792

  Fly   526 AYLKTLVKEQKKFIIFAHHRVMMDAISDFLSGLKVHYIRIDGQTRSDHRSDSVDTFQKKSSCKVA 590
            ..||...::..:.::|:..:.|:|.:..||...:..|.|:||.|....|...:|.|.......|.
plant   793 EVLKVWKQQGHRVLLFSQTQQMLDILESFLVANEYSYRRMDGLTPVKQRMALIDEFNNSEDMFVF 857

  Fly   591 LLSLKACNSGITLTAAEIIVFAELDWNPSTLAQAESRAHRIGQTKPVICRYLIAHNTADDIIWN- 654
            :|:.|....|..||.|..::..:.|||||...||..||.||||.|.|....||...|.::.::: 
plant   858 VLTTKVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKKDVTVYRLITRGTIEEKVYHR 922

  Fly   655 ----------MLKNKQ------------------------------------EVLSKVGIFAE-- 671
                      :|||.|                                    |.::.||:.::  
plant   923 QIYKHFLTNKILKNPQQRRFFKARDMKDLFILKDDGDSNASTETSNIFSQLAEEINIVGVQSDKK 987

  Fly   672 ---NLQKATHTAAPTSSHKIEEYFSPSTSTSLEPERNSIKQYF------STIPAKEPPEQNNNTE 727
               :.|.|.|..|..||.:.:...:..|..:::.|.|.:|..|      |.:........|:..|
plant   988 PESDTQLALHKTAEGSSEQTDVEMTDKTGEAMDEETNILKSLFDAHGIHSAVNHDAIMNANDEEE 1052

  Fly   728 MTKVNKAESDIA 739
            ..::....|.:|
plant  1053 KMRLEHQASQVA 1064

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Marcal1NP_608883.1 HARP 160..216 CDD:462166 13/119 (11%)
HepA <233..666 CDD:440319 120/582 (21%)
DEXHc_HARP_SMARCAL1 247..456 CDD:350768 57/272 (21%)
CHR8NP_001324142.1 HepA <435..923 CDD:440319 113/515 (22%)
CSB_WHD 1179..1245 CDD:439329
Blue background indicates that the domain is not in the aligned region.

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