DRSC/TRiP Functional Genomics Resources

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Protein Alignment Marcal1 and Chd3

DIOPT Version :9

Sequence 1:NP_608883.1 Gene:Marcal1 / 33709 FlyBaseID:FBgn0031655 Length:755 Species:Drosophila melanogaster
Sequence 2:NP_649111.1 Gene:Chd3 / 40111 FlyBaseID:FBgn0023395 Length:892 Species:Drosophila melanogaster


Alignment Length:727 Identity:160/727 - (22%)
Similarity:268/727 - (36%) Gaps:202/727 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 QRPNGGNERNKPTLSLSSDKEKPVAVLLGNSITCNLYLISTHRFAAQTSGYH---------EQLV 172
            :.||||                            .:||:.....:...|.:.         .|.:
  Fly   189 EEPNGG----------------------------TMYLVKWRELSYNDSSWERESDSIPGLNQAI 225

  Fly   173 TVFKNMPTKCYDGQTRIWSFDLSDYQSLKTHAADL-KPYVHMNGIPKKVLDLCGQPPVVPERSVL 236
            .::|.:.:                  |.|....|. .|.:.:|   ||..|   ||..:.|..: 
  Fly   226 ALYKKLRS------------------SNKGRQRDRPAPTIDLN---KKYED---QPVFLKEAGL- 265

  Fly   237 ASIEPKLADQLMPFQQDGVCFAIAQKGR---IMICDEMGLGKTYQALA-VADYFKDD---WPLLV 294
                     :|.|||.:||.:.....|:   .::.||||||||.|.:. :...||:.   .|.|:
  Fly   266 ---------KLHPFQIEGVSWLRYSWGQGIPTILADEMGLGKTIQTVVFLYSLFKEGHCRGPFLI 321

  Fly   295 CTTASTRDSWAKHIMDLLPKV-PIHYV------QVLNNNQLYVGEA--------------KVLIT 338
            ....||..:|.:.:....|:: .:.||      .|:..:::...|.              .|::|
  Fly   322 SVPLSTLTNWERELELWAPELYCVTYVGGKTARAVIRKHEISFEEVTTKTMRENQTQYKFNVMLT 386

  Fly   339 SYNMMERHEDKLMQRKFGFIIFDESHTLKNSKAKCTTTAKRLTDQAKRVVLLSGTPALSRPLELF 403
            ||..:......|....:..::.||:|.|:::::|......:.....|  :||:|||..:...|||
  Fly   387 SYEFISVDAAFLGCIDWAALVVDEAHRLRSNQSKFFRILSKYRIGYK--LLLTGTPLQNNLEELF 449

  Fly   404 TQLQMI-DGKFMNFMEFTTRYCDGKQSTFGWDANGQSNLEELKVILHLKYMLRRTKVEVLPQLAE 467
            ..|..: .|||.:...|...:.         |.:.:..::.|..||. .:||||.|.:||..:..
  Fly   450 HLLNFLSSGKFNDLQTFQAEFT---------DVSKEEQVKRLHEILE-PHMLRRLKADVLKSMPP 504

  Fly   468 KNRETVVLDPALVWTNAETKETLDAFNKELKTAK---------GR-------------------- 503
            |: |.:|        ..|.......|.|.:.|..         ||                    
  Fly   505 KS-EFIV--------RVELSSMQKKFYKHILTKNFKALNQKGGGRVCSLLNIMMDLRKCCNHPYL 560

  Fly   504 ---ATEEILLR---FYARTAEVKTRAVCAYLKTLVKEQK----KFIIFAHHRVMMDAISDFLSGL 558
               |.||..:.   .|..::..|.......|..::|:.|    :.::|:....|::.:..||.|.
  Fly   561 FPSAAEEATISPSGLYEMSSLTKASGKLDLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFLEGE 625

  Fly   559 KVHYIRIDGQTRSDHRSDSVDTFQKK-SSCKVALLSLKACNSGITLTAAEIIVFAELDWNPSTLA 622
            ...|.||||..:.|.|..::|.|... |...|.|||.:|...||.|..|:.::..:.||||....
  Fly   626 GYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDV 690

  Fly   623 QAESRAHRIGQTKPVICRYLIAHNTADDIIWNMLKNKQ-----------------------EVLS 664
            ||.|||||:||.|.|:....:.||:.::.|..:.|:|.                       |.:.
  Fly   691 QAFSRAHRMGQKKKVMIYRFVTHNSVEERIMQVAKHKMMLTHLVVRPGMGGMTTNFSKDELEDIL 755

  Fly   665 KVG---IFAENLQKATHTAAPTSSHKIEEYFSPSTSTSLEPERNSIKQYFSTI-----PAKEPPE 721
            :.|   :|.:...:|.|......:..::.     |:..:|.:.:...:|.|:.     ..||..|
  Fly   756 RFGTEDLFKDGKSEAIHYDDKAVADLLDR-----TNRGIEEKESWANEYLSSFKVASYATKEDHE 815

  Fly   722 Q----NNNTEMT 729
            :    ||:.|.|
  Fly   816 EHDDYNNDAENT 827

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Marcal1NP_608883.1 HARP 160..215 CDD:284784 7/64 (11%)
DEXDc 239..420 CDD:214692 51/209 (24%)
DEXDc 265..394 CDD:238005 35/153 (23%)
Helicase_C 518..632 CDD:278689 39/118 (33%)
Chd3NP_649111.1 PHD2_CHD_II 37..79 CDD:277007
CHROMO 85..147 CDD:237991
CHROMO 181..233 CDD:214605 9/71 (13%)
SNF2_N 270..561 CDD:278600 70/311 (23%)
DEXDc 288..440 CDD:238005 35/153 (23%)
Helicase_C 585..700 CDD:278689 38/114 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467216
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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