DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Marcal1 and Chd1

DIOPT Version :9

Sequence 1:NP_608883.1 Gene:Marcal1 / 33709 FlyBaseID:FBgn0031655 Length:755 Species:Drosophila melanogaster
Sequence 2:NP_001245851.1 Gene:Chd1 / 33505 FlyBaseID:FBgn0250786 Length:1900 Species:Drosophila melanogaster


Alignment Length:863 Identity:173/863 - (20%)
Similarity:300/863 - (34%) Gaps:271/863 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 STCSSSEIAEK----KRIALAKLQAKKSQLLASAPATNGKSTTSATGATQHANNGKSNPNQPQAK 62
            |:.||||..|:    ||...|:.....::....|||...|..|..:..:..:.:.....:..|.:
  Fly   185 SSSSSSEEEEEDYRPKRTRQARKPPTAAEKSKKAPAPKNKKKTWDSDESDESEDSDDEVSTAQKR 249

  Fly    63 SP-LNFYRSPTGEQKKINRSGPTPGDNKSSSFLNALKAIKQTSNRELSRGAAHPYQRPNGG---- 122
            .| ....||...:|::..|..|...::....     .|.|:.:.|.  :|||..|:..:..    
  Fly   250 KPAATTSRSKLAQQQQRRRVKPFSSEDSDDD-----DASKRCATRR--KGAAVSYKEASEDEATD 307

  Fly   123 ---------NERNKPTLSLSSDKEKPVAVL-------------LGNSITCNLYLISTHRFAAQTS 165
                     :|....|.:.::::|:....:             .||..|  :|.|..:.|... :
  Fly   308 SEDLLEFEYDESQAATTAATAEEEEKCETIERILAQRAGKRGCTGNQTT--IYAIEENGFDPH-A 369

  Fly   166 GYHEQLVTVFKNMPTKCYDGQTRI----WSFDLSDYQS--------------------------- 199
            |:.|      |..|....:.|..|    ||:..:.::|                           
  Fly   370 GFDE------KQTPDAETEAQFLIKWKGWSYIHNTWESEATLRDMKAKGMKKLDNFIKKEKEQAY 428

  Fly   200 ----------------LKTHAADLKPYVHMNGIPKKVLDLCGQPP-------------------- 228
                            |:.....||.|.:::.|..|     |..|                    
  Fly   429 WRRYAGPEDIDYFECQLELQHELLKSYNNVDRIIAK-----GSKPDDGTEEYLCKWQSLPYAEST 488

  Fly   229 ---------------------------------VVPERSVLASI--EPKLADQ---LMPFQQDGV 255
                                             |:..|...:.|  :|:....   |..:|.||:
  Fly   489 WEDAALVLRKWQRCAEQFNDRESSKCTPSRHCRVIKYRPKFSRIKNQPEFLSSGLTLRDYQMDGL 553

  Fly   256 CFAI---AQKGRIMICDEMGLGKTYQALA-VADYFKDD---WPLLVCTTASTRDSWAKHIMDLLP 313
            .:.:   .::..:::.||||||||.|.:. :...||..   .|.|.....||..:|.:......|
  Fly   554 NWLLHSWCKENSVILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAP 618

  Fly   314 KVPIHYVQVLNNNQLYVGEAK---------------------VLITSYNMMERHEDKLMQRKFGF 357
            .:         |...|:|:.|                     .::|:|.::.:.:..|...::..
  Fly   619 DM---------NVVTYLGDIKSRELIQQYEWQFESSKRLKFNCILTTYEIVLKDKQFLGTLQWAA 674

  Fly   358 IIFDESHTLKNSKAKCTTTAKRLTDQAKRVVLLSGTPALSRPLELFTQLQMI-DGKFMNFMEFTT 421
            ::.||:|.|||..:....:.|......:  :|::|||..:...||:..|..| ..||..:..|..
  Fly   675 LLVDEAHRLKNDDSLLYKSLKEFDTNHR--LLITGTPLQNSLKELWALLHFIMPDKFDTWENFEV 737

  Fly   422 RYCDGKQSTFGWDANGQSNL-EELKVILHLKYMLRRTKVEVLPQLAEKNRETVVLDPALV----- 480
            ::.:.:.       .|.:.| ::|:     .|:|||.|.:|...|..|..:.:.::...:     
  Fly   738 QHGNAED-------KGYTRLHQQLE-----PYILRRVKKDVEKSLPAKVEQILRVEMTSLQKQYY 790

  Fly   481 -WTNAETKETLDAFNK--------------ELK-----TAKGRATEEILLRFYARTAEVKTRAVC 525
             |.   ..:..||..|              |||     .|..|.:|..|:......|        
  Fly   791 KWI---LTKNFDALRKGKRGSTSTFLNIVIELKKCCNHAALIRPSEFELMGLQQDEA-------- 844

  Fly   526 AYLKTLVKEQKKFIIF---------AHHRV--------MMDAISDFLSGLKVHYIRIDGQTRSDH 573
              |:||:|...|.::.         ..|||        |:|.::|:|......:.|:||..:.:.
  Fly   845 --LQTLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGEM 907

  Fly   574 RSDSVDTFQKKSS---CKVALLSLKACNSGITLTAAEIIVFAELDWNPSTLAQAESRAHRIGQTK 635
            |..::|.|..:.|   |  .|||.:|...||.|..|:.::..:.||||....||::|||||||..
  Fly   908 RRQALDHFNAEGSQDFC--FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKN 970

  Fly   636 PV-ICRYLIAHNTADDII 652
            .| |.|.:.|.:..:.|:
  Fly   971 QVNIYRLVTARSVEEQIV 988

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Marcal1NP_608883.1 HARP 160..215 CDD:284784 14/101 (14%)
DEXDc 239..420 CDD:214692 47/214 (22%)
DEXDc 265..394 CDD:238005 33/153 (22%)
Helicase_C 518..632 CDD:278689 38/133 (29%)
Chd1NP_001245851.1 CHROMO 374..422 CDD:237991 7/47 (15%)
Chromo 458..509 CDD:278797 4/55 (7%)
SNF2_N 548..829 CDD:278600 64/306 (21%)
DEXDc 564..709 CDD:238005 33/155 (21%)
Helicase_C 852..967 CDD:278689 34/116 (29%)
DUF4208 1521..1610 CDD:290618
DUF3824 1795..>1894 CDD:289625
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467241
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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