DRSC/TRiP Functional Genomics Resources

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Protein Alignment Marcal1 and smarca2

DIOPT Version :10

Sequence 1:NP_608883.1 Gene:Marcal1 / 33709 FlyBaseID:FBgn0031655 Length:755 Species:Drosophila melanogaster
Sequence 2:XP_073805988.1 Gene:smarca2 / 334032 ZFINID:ZDB-GENE-030131-5964 Length:1578 Species:Danio rerio


Alignment Length:570 Identity:142/570 - (24%)
Similarity:231/570 - (40%) Gaps:137/570 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   266 MICDEMGLGKTYQALAVADYFKD----DWPLLVCTTAST-------RDSWAKHIMDLLPK----- 314
            ::.||||||||.|.:.:..|..:    :.|.|:....||       .|.||..|:.:..|     
Zfish   748 ILADEMGLGKTIQTIGLITYLMEHKRLNGPYLIIVPLSTLSNWVYELDKWAPSIVKIAYKGTPSM 812

  Fly   315 ----VPIHYVQVLNNNQLYVGEAKVLITSYNMMERHEDKLMQRKFGFIIFDESHTLKNSKAKCTT 375
                ||          ||..|:..||||:|..:.:.:..|.:.::.::|.||.|.:||...|.|.
Zfish   813 RRSLVP----------QLRSGKFNVLITTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQ 867

  Fly   376 TAKRLTDQ-AKRVVLLSGTPALSRPLELFTQLQMIDGKFMNFMEFTT-RYCDGKQSTFGWDANG- 437
            ...  |.. |.|.:||:|||..::..||:.        .:||:..|. :.|    |||....|. 
Zfish   868 VLN--THYVAPRRLLLTGTPLQNKLPELWA--------LLNFLLPTIFKSC----STFEQWFNAP 918

  Fly   438 ------QSNLEELKVILHLK--------YMLRRTKVEVLPQLAEKNRETVVLDPA----LVWTNA 484
                  :.:|.|.:.||.::        ::|||.|.||..||.||....:..|.:    :::.:.
Zfish   919 FAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSAIQKVLYRHM 983

  Fly   485 ETKETLDAFNKELKTAKGRATEEILLRFYARTAEV------------------------------ 519
            :.|..|.....| |..||:...:.|:....:..::                              
Zfish   984 QGKGILLTDGSE-KDKKGKGGAKTLMNTIMQLKKICNHPYMFQHIEESFAEHLGFPNGIISGPDL 1047

  Fly   520 -----KTRAVCAYLKTLVKEQKKFIIFAHHRVMMDAISDFLSGLKVHYIRIDGQTRSDHRSDSVD 579
                 |...:...|..|.....:.::|.....:|..:.|:.......|:|:||.|:|:.|:..:.
Zfish  1048 YRASGKFELLDRILPKLKATNHRVLLFCQMTSLMTILEDYFGYRNFLYLRLDGTTKSEDRAMLLK 1112

  Fly   580 TFQKK-SSCKVALLSLKACNSGITLTAAEIIVFAELDWNPSTLAQAESRAHRIGQTKPVICRYLI 643
            .|.:: |...:.|||.:|...|:.|.||:.:|..:.||||....||:.|||||||...|....|.
Zfish  1113 KFNEEGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLC 1177

  Fly   644 AHNTADDIIWNMLKNKQEVLSKV---GIFAENLQKATHTAAPTSSHKIEEYFSPSTSTSLEPERN 705
            ..|:.::.|....|.|..|..||   |:|.:.          :|||:...:.    ...||.|..
Zfish  1178 TVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK----------SSSHERRAFL----QAILEHEEQ 1228

  Fly   706 SIKQYFSTIPAKEPPEQNNNTEMTKVNKAESDIAAFFNDDDDEAFLELDI 755
            ::::       .|.|:.....:|         ||.  |:|:.|.|:.:|:
Zfish  1229 NMEE-------DEVPDDETLNQM---------IAR--NEDEFELFMRMDL 1260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Marcal1NP_608883.1 HARP 160..216 CDD:462166
HepA <233..666 CDD:440319 122/476 (26%)
DEXHc_HARP_SMARCAL1 247..456 CDD:350768 61/226 (27%)
smarca2XP_073805988.1 None
Blue background indicates that the domain is not in the aligned region.

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