DRSC/TRiP Functional Genomics Resources

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Protein Alignment Marcal1 and smarca5

DIOPT Version :10

Sequence 1:NP_608883.1 Gene:Marcal1 / 33709 FlyBaseID:FBgn0031655 Length:755 Species:Drosophila melanogaster
Sequence 2:NP_001075098.2 Gene:smarca5 / 282615 ZFINID:ZDB-GENE-021125-1 Length:1035 Species:Danio rerio


Alignment Length:953 Identity:203/953 - (21%)
Similarity:324/953 - (33%) Gaps:344/953 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSTCSSSEIAEKKRIALAKLQAKKSQLLASAPA-----TNGKSTTSATGATQHANNGKSNPNQPQ 60
            ||...||  .|::|      :.:.|||..:.||     .||....|.|.....|.:  |:|...:
Zfish     1 MSQTESS--MEQQR------EEEPSQLDPAGPAEDDTSENGHDEASDTAMDSEAQS--SSPPSAK 55

  Fly    61 AKSPLNFYRSPTGEQKKINRSGPTPGDNKSSSFLNALK-----------AIKQTSNRELSRGAAH 114
            .|..|.      |.::|:.       .::::.|...||           |.::|....|......
Zfish    56 GKDLLG------GYEEKVQ-------TDRTNRFEYLLKQTEVFAHFIQPAAQKTPTSPLKMKPGR 107

  Fly   115 PY----QRPN---GGNERNKPTLSLSSDKEKPVAVLLGNSITCNLYLISTHRFAAQTSGYHEQLV 172
            |.    ::.|   .|:.|::.|     ::|:...:|..||              ..||     :.
Zfish   108 PRIKKDEKQNLLSAGDNRHRRT-----EQEEDEELLSENS--------------KATS-----VC 148

  Fly   173 TVFKNMPTKCYDGQTRIWSFDLSDYQSLKTHAADLKPYVHMNGIPKKVLDLCGQPPVVPERSVLA 237
            |.|.:.|:....|:.|       |||              :.|:                     
Zfish   149 TRFDDSPSYVKTGKLR-------DYQ--------------VRGL--------------------- 171

  Fly   238 SIEPKLADQLMPFQQDGVCFAIAQKGRIMICDEMGLGKTYQALAVADYFKD----DWPLLVCTTA 298
                   :.|:...::|:      .|  ::.||||||||.|.:::..|.|.    ..|.:|....
Zfish   172 -------NWLISLYENGI------NG--ILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPK 221

  Fly   299 STRDSWAKHIMDLLPKVPIHYVQVLNNNQ---------LYVGEAKVLITSYNMM--ERHEDKLMQ 352
            ||..:|.......:|.  :..|.::.:.:         |..||..|.:|||.|:  ||    .:.
Zfish   222 STLYNWMNEFKRWVPS--LKAVCLIGDREERTAFIRDTLLPGEWDVCVTSYEMLIIER----AVF 280

  Fly   353 RKFG--FIIFDESHTLKNSKAKCTTTAKRLTDQAKRVVLLSGTPALSRPLELFTQLQMIDGKFMN 415
            :||.  :::.||:|.:||.|:|.:...:..  :....:||:|||..:...||:..|..:.....|
Zfish   281 KKFNWRYLVIDEAHRIKNEKSKLSEIVREF--KTTNRLLLTGTPLQNNLHELWALLNFLLPDVFN 343

  Fly   416 FME-----FTTRYCDGKQSTFGWDANGQSNLEELKVILHLKYMLRRTKVEV----LPQ------- 464
            ..|     |.|..|.|....          :|.|..:|. .::|||.|.:|    ||:       
Zfish   344 SSEDFDAWFDTNNCLGDTKL----------VERLHTVLR-PFLLRRIKADVEKSLLPKKEIKIYV 397

  Fly   465 -LAEKNRETVVLDPALVWTNAETKETLDAFNKELKTAKGRATEEIL------------------- 509
             |::..||         |......:.:|..|...|..|.|....::                   
Zfish   398 GLSKMQRE---------WYTKILMKDIDILNSAGKMDKMRLLNVLMQLRKCCNHPYLFDGAEPGP 453

  Fly   510 -----LRFYARTAEVKTRAVCAYLKTLVKEQ-KKFIIFAHHRVMMDAISDFLSGLKVHYIRIDGQ 568
                 |.....:.::   .|...|...:||| .:.:||:....::|.:.|:.......|.|:|||
Zfish   454 PYTTDLHLVVNSGKM---VVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYGYCRLDGQ 515

  Fly   569 TRSDHRSDSVDTFQKKSSCK-VALLSLKACNSGITLTAAEIIVFAELDWNPSTLAQAESRAHRIG 632
            |..:.|..|::.|.:.:|.| :.:||.:|...||.|..|::::..:.||||....||..||||||
Zfish   516 TPHEERQISINAFNEPNSSKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIG 580

  Fly   633 QTKPVICRYLIAHNTADDII------------------------WNMLKNKQEVLSKV------- 666
            |.|.|.....|..||.::.|                        .|.| .|.|:||.:       
Zfish   581 QKKQVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDPSMNKL-GKDEMLSIIRHGATHV 644

  Fly   667 --------------GI------------------------------------------------- 668
                          ||                                                 
Zfish   645 FASKESEITDEDIDGILERGERKTMEMKEKMANLGEGSLRNFTMDTENSVYNFEGEDYREKKKVV 709

  Fly   669 --------------------FAENLQ----KATHTAAPTSSHKIE--EYFSPSTSTSLEPERNSI 707
                                |.|.|:    ||.....|.....::  ::|.|.....||.|   |
Zfish   710 TNWIEPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKE---I 771

  Fly   708 KQYFSTIPAKEP--PEQNNNTEMTKVNKAESDIAAFFNDDDDE 748
            ..|..||..|.|  |:..|:.||.|..:|:.|.|...|:::.|
Zfish   772 LYYRKTIGYKVPRNPDLPNSAEMQKEEQAKIDEAEPLNEEELE 814

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Marcal1NP_608883.1 HARP 160..216 CDD:462166 10/55 (18%)
HepA <233..666 CDD:440319 126/516 (24%)
DEXHc_HARP_SMARCAL1 247..456 CDD:350768 58/230 (25%)
smarca5NP_001075098.2 PLN03142 4..1030 CDD:215601 201/950 (21%)

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